Genome sequencing and annotation of Amycolatopsis azurea {DSM} 43854T

Khatri, Indu and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Amycolatopsis azurea {DSM} 43854T. Genomics Data , 2. 44 - 45.

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Abstract

We report the 9.2 Mb genome of the azureomycin A and B antibiotic producing strain Amycolatopsis azurea isolated from a Japanese soil sample. The draft genome of strain DSM 43854T consists of 9,223,451 bp with a G + C content of 69.0% and the genome contains 3 rRNA genes (5S–23S–16S) and 58 aminoacyl-tRNA synthetase genes. The homology searches revealed that the PKS gene clusters are supposed to be responsible for the biosynthesis of naptomycin, macbecin, rifamycin, mitomycin, maduropeptin enediyne, neocarzinostatin enediyne, C-1027 enediyne, calicheamicin enediyne, landomycin, simocyclinone, medermycin, granaticin, polyketomycin, teicoplanin, balhimycin, vancomycin, staurosporine, rubradirin and complestatin.

Item Type:	Article
Additional Information:	OPEN ACCESS
Uncontrolled Keywords:	mycolatopsis azurea strain DSM 43854T; Illumina-HiSeq; NGS QC tool kit;Rapid Annotations using Subsystems Technology (RAST)
Subjects:	Q Science > QR Microbiology
Depositing User:	Dr. K.P.S.Sengar
Date Deposited:	29 May 2014 09:13
Last Modified:	29 May 2014 09:13
URI:	http://crdd.osdd.net/open/id/eprint/1502

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