Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach.

Muthu Krishnan, S (2016) Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach. Journal of theoretical biology, 409. pp. 27-37. ISSN 1095-8541

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Abstract

Hemoglobin is an oxygen-binding protein widely present in all kingdoms of life from prokaryotic to eukaryotic, but well established in the vertebrate system. An attempt was made to determine the Vertebrate hemoglobin (VerHb) protein on their animal classifications, based on general pseudo amino acid composition (PseAAC)'s evolutionary profiles and hybrid approach. The support vector machine (SVM) has been applied to develop all models, the prediction results further compared according to their animal classification. The performance of the approaches estimated using five-fold cross-validation techniques. The prediction performance was further investigated by receiver operating characteristic (ROC) and prediction score graphs. The prediction accuracy (ACC), sensitivity (SN) and specificity (SP) were examined to find the accurate predictions on the threshold level. Based on the approach, a web-tool has been developed for identifying the VerHb proteins.

Item Type:	Article
Additional Information:	Copyright of the article belongs to Elsevier Science.
Uncontrolled Keywords:	Amphibians hemoglobin; Aves hemoglobin; Confusion matrix; Fish hemoglobin; Hemoglobin; Hybrid approaches; Mammalian hemoglobin; PSSM; Position specific scoring matrix; ROC Analysis; Reptiles hemoglobin; SVM; Support Vector Machines; Vertebrate hemoglobin
Subjects:	Q Science > QR Microbiology
Depositing User:	Dr. K.P.S.Sengar
Date Deposited:	06 Sep 2016 06:19
Last Modified:	06 Sep 2016 06:19
URI:	http://crdd.osdd.net/open/id/eprint/1848

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