A search tool for identification and analysis of conserved sequence patterns in Saccharomyces spp. orthologous promoter.

Kohli, Davinder K and Srikanth, Chittur V and Bachhawat, Anand K (2004) A search tool for identification and analysis of conserved sequence patterns in Saccharomyces spp. orthologous promoter. In silico biology, 4 (4). pp. 411-5. ISSN 1386-6338

HTML (OPEN ACCESS) bachhawat2004.mht - Published Version Available under License Creative Commons Attribution Non-commercial. Download (89Kb)

Abstract

We describe a web-based resource to identify, search and analyze sequence patterns conserved in the multiple sequence alignments of orthologous promoters from closely related / distant Saccharomyces spp. The webtool interfaces with a database where conserved sequence patterns (greater than 4 bp) have been previously extracted from genome-wide promoter alignments, allowing one to carry out user-defined genome-wide searches for conserved sequences to assist in the discovery of novel promoter elements based on comparative genomics. The web-based server can be accessed at http://www2.imtech.res.in/ anand/sacch_prom_pat.html.

Item Type:	Article
Additional Information:	OPEN ACCESS
Uncontrolled Keywords:	Saccharomyces, orthologs, promoter, database, comparative genomics, motif
Subjects:	Q Science > QR Microbiology
Depositing User:	Dr. K.P.S.Sengar
Date Deposited:	08 Jan 2012 05:44
Last Modified:	08 Jan 2012 05:44
URI:	http://crdd.osdd.net/open/id/eprint/197

Actions (login required)

View Item