Issac, Biju and Raghava, G.P.S. (2002) GWFASTA: server for FASTA search in eukaryotic and microbial genomes. BioTechniques, 33 (3). 548-50, 552, 554. ISSN 0736-6205

PDF raghava2002.1.pdf - Published Version Restricted to Registered users only Download (252Kb) | Request a copy

Abstract

Similarity searches are a powerful method for solving important biological problems such as database scanning, evolutionary studies, gene prediction, and protein structure prediction. FASTA is a widely used sequence comparison tool for rapid database scanning. Here we describe the GWFASTA server that was developed to assist the FASTA user in similarity searches against partially and/or completely sequenced genomes. GWFASTA consists of more than 60 microbial genomes, eight eukaryote genomes, and proteomes of annotatedgenomes. Infact, it provides the maximum number of databases for similarity searching from a single platform. GWFASTA allows the submission of more than one sequence as a single query for a FASTA search. It also provides integrated post-processing of FASTA output, including compositional analysis of proteins, multiple sequences alignment, and phylogenetic analysis. Furthermore, it summarizes the search results organism-wise for prokaryotes and chromosome-wise for eukaryotes. Thus, the integration of different tools for sequence analyses makes GWFASTA a powerful toolfor biologists.

This site is maintained by Institute of Microbial Technology, Chandigarh, India