@article{open105, volume = {17}, number = {12}, month = {December}, author = {H Singh and G.P.S. Raghava}, note = {Copyright of this article belongs to Oxford University Press}, title = {ProPred: prediction of HLA-DR binding sites.}, publisher = {Oxford University Press}, year = {2001}, journal = {Bioinformatics (Oxford, England)}, pages = {1236--7}, url = {http://crdd.osdd.net/open/105/}, abstract = {ProPred is a graphical web tool for predicting MHC class II binding regions in antigenic protein sequences. The server implement matrix based prediction algorithm, employing amino-acid/position coefficient table deduced from literature. The predicted binders can be visualized either as peaks in graphical interface or as colored residues in HTML interface. This server might be a useful tool in locating the promiscuous binding regions that can bind to several HLA-DR alleles. AVAILABILITY: The server is available at http://www.imtech.res.in/raghava/propred/ CONTACT: raghava@imtech.res.in SUPPLEMENTARY INFORMATION: http://www.imtech.res.in/raghava/propred/page3.html} }