2FKJ	De Novo Protein	date	Jan 04, 2006
title	The Crystal Structure Of Engineered Ospa
authors	K.Makabe, V.Terechko, G.Gawlak, S.Yan, S.Koide
compound		source
Molecule: Outer Surface Protein A Chain: A, B, C Engineered: Yes		Organism_scientific: Borrelia Burgdorferi Expression_system: Escherichia Coli Expression_system_common: Bacteria
symmetry	Space Group: P 1 21 1	R_factor	0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.150 105.500 88.981 90.00 93.24 90.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component A, C, B cell outer membrane
Primary reference	Atomic structures of peptide self-assembly mimics., Makabe K, McElheny D, Tereshko V, Hilyard A, Gawlak G, Yan S, Koide A, Koide S, Proc Natl Acad Sci U S A. 2006 Nov 8;. PMID:17093048

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (2fkj.pdb1.gz) 164 Kb CSU: Contacts of Structural Units for 2FKJ Likely Quarternary Molecular Structure file(s) for 2FKJ Structure Factors (183 Kb) Retrieve 2FKJ in mmCIF format [Save to disk]

View 2FKJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2FKJ

Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only) Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges. Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2FKJ, from MSDmotif at EBI Fold representative 2fkj from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fkj_A] [2fkj_C] [2fkj_B]

Other resources with information on 2FKJ

PDBREPORT (protein verification by WHAT_CHECK procedures)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2007
Bioinformatics and Biological Computing
Weizmann Institute of Science

---