Raghava's Group
ApoCanD: Database of Human Apoptotic Proteins in the context of cancer
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Protein:
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Mutation Data (+)
#
Name/ID
Cell Line/Tumor sample
Tissue of Origin
Reference ID
cDNA change
Protein change
Source
FATHMM Prediction
PolyPhen2 Prediction
*NP: Not Predicted
Download File
Copy number variation and expression profile (+)
Expression and CNV data is not present for !!
Gene Essentiality Data (+)
Note:
Lower the GARP score (more negative), higher the essentiality of the gene. P-value tells about the significane of GARP score.
Gene essentiality data is not present in COLT database!!
Tertiary structure (+)
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Modelled Structure
Structures available in PDB
Download PDB
Structure Domains (+)
1. PFAM domains are not present!!
2. Superfaimly domains are not present!!
Sequence Alignment (+)
Users must enabled the Java in their browser to see sequence alignments.
1. Variants are not present in 1000 Genomes!!
2. Mutants are not present in CCLE!!
4. Mutants are not present in COSMIC!!
4. Sequence alignment with homologus proteins:
Click on button to get Sequence alignment with Coverage, Consensus and Quality
Sequence Profiles (+)
HMM
With Uniprot database
With Mutants
With 1000 Genome Variants
PSSM
With Uniprot database
With Mutants
With 1000 Genome Variant
Post Translational Modifications (+)
Post translational modifications are not found!!
Other Databases Link (+)
Proteomics DB
COSMIC
Gene Atlas
STRING
PIR
QuickGO
HGNC
Ensembl Genome Browser
TreeFam
UniProt
Expression Atlas
Protein Atlas
OMIM
IntAct
PharmGKB