Raghava's Group
ApoCanD: Database of Human Apoptotic Proteins in the context of cancer
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Protein: LRDD
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Mutation Data (+)
#
Name/ID
Cell Line/Tumor sample
Tissue of Origin
Reference ID
cDNA change
Protein change
Source
FATHMM Prediction
PolyPhen2 Prediction
*NP: Not Predicted
Download File
Copy number variation and expression profile (+)
Expression and CNV data is not present for LRDD!!
Gene Essentiality Data (+)
Note:
Lower the GARP score (more negative), higher the essentiality of the gene. P-value tells about the significane of GARP score.
Gene essentiality data is not present in COLT database!!
Tertiary structure (+)
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Modelled Structure
Structures available in PDB
Download PDB
Structure Domains (+)
1. PFAM domains are not present!!
2. Superfaimly domains are not present!!
Sequence Alignment (+)
Users must enabled the Java in their browser to see sequence alignments.
1. Sequence alignment with 1000 genome variations:
2. Mutants are not present in CCLE!!
4. Mutants are not present in COSMIC!!
4. Sequence alignment with homologus proteins:
Sequence Profiles (+)
HMM
With Uniprot database
With Mutants
With 1000 Genome Variants
PSSM
With Uniprot database
With Mutants
With 1000 Genome Variant
Post Translational Modifications (+)
Post translational modifications are not found!!
Other Databases Link (+)
Proteomics DB
COSMIC
Gene Atlas
STRING
PIR
LRDD
LRDD
LRDD
QuickGO
HGNC
Ensembl Genome Browser
TreeFam
UniProt
LRDD
LRDD
Expression Atlas
Protein Atlas
OMIM
IntAct
PharmGKB
LRDD