dbEM

Protein: CDY1

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Mutation Data (+)

# Cell Line/Tumor sample Tissue of Origin cDNA change Protein change Source FATHMM Prediction PolyPhen2 Prediction

*NP: Not Predicted
Copy number variation and expression profile (+)

Expression and CNV data is not present for CDY1!!
Gene Essentiality Data (+)

Note: Lower the GARP score (more negative), higher the essentiality of the gene. P-value tells about the significane of GARP score.

test
Tertiary structure (+)

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Modelled Structure Structures available in PDB

2FBM,
Structure Domains (+)

1. PFAM Domains:

Domain ID Domain Name Start Site End Site E-value
PF00385 Chromo 6 57 1.6e-17
PB014969 Pfam-B_14969 83 174 8.6e-20
PF00378 ECH 290 534 1.5e-37

2. Superfamily Domains:

Domain ID Start Site End Site E-value
0038654 284 529 5.64e-55
0051887 3 63 1.78e-18
Sequence Alignment (+)

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1. Variants are not present in 1000 Genomes!!

2. Mutants are not present in CCLE!!

4. Mutants are not present in COSMIC!!

4. Sequence alignment with homologus proteins:
  Sequence Profiles (+)

HMM
  With Uniprot database     With Mutants      With 1000 Genome Variants
PSSM
  With Uniprot database     With Mutants      With 1000 Genome Variant
Post Translational Modifications (+)

Post translational modifications are not found!!
Other Databases Link (+)

Proteomics DB COSMIC Gene Atlas STRING PIR

CDY1 CDY1 CDY1

QuickGO HGNC Ensembl Genome Browser TreeFam UniProt

CDY1 CDY1

Expression Atlas Protein Atlas OMIM IntAct PharmGKB

CDY1

CSIR-IMTECH

Raghava's Group

Domain ID	Domain Name	Start Site	End Site	E-value
PF00385	Chromo	6	57	1.6e-17
PB014969	Pfam-B_14969	83	174	8.6e-20
PF00378	ECH	290	534	1.5e-37

Proteomics DB	COSMIC	Gene Atlas	STRING	PIR
CDY1	CDY1	CDY1
QuickGO	HGNC	Ensembl Genome Browser	TreeFam	UniProt
	CDY1		CDY1
Expression Atlas	Protein Atlas	OMIM	IntAct	PharmGKB
CDY1

Modelled Structure	Structures available in PDB
	2FBM,

Domain ID	Start Site	End Site	E-value
0038654	284	529	5.64e-55
0051887	3	63	1.78e-18

dbEM

Protein: CDY1

Mutation Data (+)

Copy number variation and expression profile (+)

Gene Essentiality Data (+)

Tertiary structure (+)

Structure Domains (+)

Sequence Alignment (+)

Sequence Profiles (+)

Post Translational Modifications (+)

Other Databases Link (+)