GeneMark.hmm for Prokaryotes and Low Eukaryotes (Version 2.1) (Reload this page) Reference: Lukashin A. and Borodovsky M., GeneMark.hmm: new solutions for gene finding, NAR, 1998, Vol. 26, No. 4, pp. 1107-1115. [ Download PDF ] This page has been updated to run version 2.1 of Genemark.hmm for prokaryotes, as well as version 2.4 of GeneMark. This version is significantly faster that the previous version and can analyze a sequence of 1 million base pairs in under 15 seconds. Support of prediction of overlapping genes has been vastly improved as well.0. Please note that email is the only way to receive results for sequences longer than 4 MB. This service is in a testing phase. Please report problems and offer suggestions to John Besemer . UPDATE (January 18, 2002): New models included for many newly sequenced prokaryotic genomes Listing of previous updates ------------------------------------------------------------------------ Gene Prediction Results Information on input sequence Sequence title: Aeropyrum Length: 1669695 bp G+C percentage: 56.31 % Parse predicted by GeneMark.hmm 2.1 GeneMark.hmm PROKARYOTIC (Version 2.2) Model organism: Pseudonative.model Fri Jan 9 00:52:28 2004 Predicted genes Gene Strand LeftEnd RightEnd Gene Class # Length 1 + 2270 2836 567 2 2 + 3905 5440 1536 1 3 - 6213 7820 1608 1 4 + 8071 8889 819 1 5 + 8908 9840 933 1 6 + 9991 11652 1662 1 7 - 11687 11803 117 1 8 - 12387 13907 1521 1 9 - 13925 15346 1422 1 10 - 15391 15909 519 1 11 - 16021 16419 399 2 12 - 16416 16823 408 1 13 + 16914 18800 1887 1 14 + 18797 19384 588 1 15 + 19396 20850 1455 1 16 + 20910 22379 1470 1 17 + 22506 23912 1407 1 18 + 23927 24823 897 1 19 + 24820 25698 879 1 20 + 25706 26812 1107 1 21 + 26997 28115 1119 1 22 + 28128 29060 933 1 23 + 29053 29907 855 1 24 + 29907 30668 762 1 25 + 30668 31273 606 1 26 - 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1669178 1669420 243 1 ------------------------------------------------------------------------ Input Sequence Title (optional): Sequence Text: Sequence File upload: Species: Typical Model Atypical Model Model Order: Output Options E-Mail Address (required for graphical output or sequences longer than 4000000 bp) Generate PDF graphics (screen) Generate PostScript graphics (email) Print GeneMark 2.4 predictions in addition to GeneMark.hmm predictions Translate predicted genes into protein Run ------------------------------------------------------------------------ Web pages maintained by GeneMark administrator, gte851w@prism.gatech.edu . 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