GeneMark.hmm for Prokaryotes and Low Eukaryotes (Version 2.1) (Reload this page) Reference: Lukashin A. and Borodovsky M., GeneMark.hmm: new solutions for gene finding, NAR, 1998, Vol. 26, No. 4, pp. 1107-1115. [ Download PDF ] This page has been updated to run version 2.1 of Genemark.hmm for prokaryotes, as well as version 2.4 of GeneMark. This version is significantly faster that the previous version and can analyze a sequence of 1 million base pairs in under 15 seconds. Support of prediction of overlapping genes has been vastly improved as well.0. Please note that email is the only way to receive results for sequences longer than 4 MB. This service is in a testing phase. Please report problems and offer suggestions to John Besemer . UPDATE (January 18, 2002): New models included for many newly sequenced prokaryotic genomes Listing of previous updates ------------------------------------------------------------------------ Gene Prediction Results Information on input sequence Sequence title: Borrelia Length: 910724 bp G+C percentage: 28.60 % Parse predicted by GeneMark.hmm 2.1 GeneMark.hmm PROKARYOTIC (Version 2.2) Model organism: Pseudonative.model Fri Jan 9 03:22:34 2004 Predicted genes Gene Strand LeftEnd RightEnd Gene Class # Length 1 - 34 99 66 2 2 + 105 677 573 1 3 - 768 1796 1029 1 4 - 1784 3106 1323 1 5 - 3103 3249 147 1 6 + 3395 5188 1794 1 7 - 5251 6306 1056 1 8 - 6309 7397 1089 1 9 - 7390 7461 72 2 10 - 7458 8315 858 1 11 + 8427 9197 771 1 12 + 9202 10206 1005 1 13 + 10203 10577 375 1 14 + 10581 11420 840 1 15 + 11421 12161 741 1 16 + 12154 12753 600 1 17 + 12746 14728 1983 1 18 - 14725 15345 621 1 19 - 15345 15623 279 1 20 + 15845 16804 960 1 21 - 16807 17817 1011 1 22 - 17792 18304 513 1 23 - 18312 19979 1668 1 24 - 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