GeneMark.hmm for Prokaryotes and Low Eukaryotes (Version 2.1) (Reload this page) Reference: Lukashin A. and Borodovsky M., GeneMark.hmm: new solutions for gene finding, NAR, 1998, Vol. 26, No. 4, pp. 1107-1115. [ Download PDF ] This page has been updated to run version 2.1 of Genemark.hmm for prokaryotes, as well as version 2.4 of GeneMark. This version is significantly faster that the previous version and can analyze a sequence of 1 million base pairs in under 15 seconds. Support of prediction of overlapping genes has been vastly improved as well.0. Please note that email is the only way to receive results for sequences longer than 4 MB. This service is in a testing phase. Please report problems and offer suggestions to John Besemer . UPDATE (January 18, 2002): New models included for many newly sequenced prokaryotic genomes Listing of previous updates ------------------------------------------------------------------------ Gene Prediction Results Information on input sequence Sequence title: Haemophilus Length: 1830138 bp G+C percentage: 38.15 % Parse predicted by GeneMark.hmm 2.1 GeneMark.hmm PROKARYOTIC (Version 2.2) Model organism: Pseudonative.model Fri Jan 9 03:47:46 2004 Predicted genes Gene Strand LeftEnd RightEnd Gene Class # Length 1 + 2 1021 1020 1 2 + 1214 3013 1800 1 3 - 3050 3835 786 1 4 - 3854 4318 465 1 5 - 4579 5241 663 1 6 + 5662 6273 612 1 7 + 6322 8748 2427 1 8 + 8750 9688 939 1 9 + 9681 10397 717 1 10 + 10467 11375 909 1 11 - 11414 11854 441 1 12 - 11857 12261 405 1 13 + 12367 13359 993 1 14 - 13423 14331 909 1 15 - 14328 15011 684 1 16 - 15013 16062 1050 1 17 - 16071 17867 1797 1 18 - 18035 18418 384 1 19 + 18676 19335 660 1 20 - 19405 20829 1425 1 21 - 21248 22687 1440 1 22 - 22689 24086 1398 1 23 - 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