GeneMark.hmm for Prokaryotes and Low Eukaryotes (Version 2.1) (Reload this page) Reference: Lukashin A. and Borodovsky M., GeneMark.hmm: new solutions for gene finding, NAR, 1998, Vol. 26, No. 4, pp. 1107-1115. [ Download PDF ] This page has been updated to run version 2.1 of Genemark.hmm for prokaryotes, as well as version 2.4 of GeneMark. This version is significantly faster that the previous version and can analyze a sequence of 1 million base pairs in under 15 seconds. Support of prediction of overlapping genes has been vastly improved as well.0. Please note that email is the only way to receive results for sequences longer than 4 MB. This service is in a testing phase. Please report problems and offer suggestions to John Besemer . UPDATE (January 18, 2002): New models included for many newly sequenced prokaryotic genomes Listing of previous updates ------------------------------------------------------------------------ Gene Prediction Results Information on input sequence Sequence title: HelicobacterJ99 Length: 1643831 bp G+C percentage: 39.19 % Parse predicted by GeneMark.hmm 2.1 GeneMark.hmm PROKARYOTIC (Version 2.2) Model organism: Pseudonative.model Fri Jan 9 04:05:20 2004 Predicted genes Gene Strand LeftEnd RightEnd Gene Class # Length 1 - 51 467 417 1 2 - 469 939 471 1 3 - 949 1779 831 1 4 - 1766 2431 666 1 5 + 2552 3235 684 1 6 + 3235 4065 831 1 7 - 5436 7337 1902 1 8 - 7758 9398 1641 1 9 - 9423 9779 357 1 10 + 10067 11746 1680 1 11 + 11743 12795 1053 1 12 + 12885 13712 828 1 13 + 13859 14140 282 1 14 + 14140 14403 264 1 15 + 14405 16768 2364 1 16 + 17077 18417 1341 1 17 + 18524 19489 966 1 18 + 19486 20703 1218 1 19 - 20764 21339 576 1 20 - 21350 22921 1572 1 21 - 23538 25610 2073 1 22 - 26315 27595 1281 1 23 + 27796 29073 1278 1 24 + 29138 29665 528 1 25 - 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