LOCUS contig08 7503 bp DNA linear BCT 25-AUG-2012 DEFINITION Burkholderia sp. SJ98. ACCESSION VERSION KEYWORDS . SOURCE Burkholderia sp. SJ98 ORGANISM Burkholderia sp. SJ98 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia. REFERENCE 1 (bases 1 to 7503) AUTHORS Kumar,S., Vikram,S. and Raghava,G.P.S. TITLE Whole genome assembly and annotation of nitro-aromatic compound degrading bacterium Burkholderia sp. SJ98 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7503) AUTHORS Kumar,S., Vikram,S. and Raghava,G.P.S. TITLE Direct Submission JOURNAL Submitted (25-AUG-2012) Bioinformatics Centre, Institute of Microbial Technology(IMTECH),Chandigarh, INDIA, Dr. G P S Raghava lab., BIC, Imtech sec.39A, Chandigarh, select a state 160036, India FEATURES Location/Qualifiers source 1..7503 /organism="Burkholderia sp. SJ98" /mol_type="genomic DNA" /strain="SJ98" /db_xref="taxon:406819" gene complement(<1..671) /locus_tag="BURK_07126" CDS complement(<1..671) /locus_tag="BURK_07126" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="imtech:BURK_07126" /translation="MAASLHKGAATLTQQKMLTTFKAFAAHARQRRYGDVEPATVTEK QLRNYVGARIEAGITPRTIQNEVSHLRRALRGAGRGDWADAVTNAQLGVPVGTRVGTG LVVDAHVLEHALEHAPADTRAWIQLERCLGLRREEMIESHKSLKQWEAALARGQSFIT IRHGTKGGRVRDTVIPTPYRDRALAAVKAALEVTMTRPYLVDATTARAAQKQVHDRFA ALGLMG" gene 670..912 /locus_tag="BURK_07131" CDS 670..912 /locus_tag="BURK_07131" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="imtech:BURK_07131" /translation="MNFASIERGCDRDRFGNDVDLFISSLLVLFVVVLHRNAPASRVL PLFRELWAATWRWVVVAGVLLPMRSFVVRRLAGSTR" gene complement(1516..1992) /locus_tag="BURK_07136" CDS complement(1516..1992) /locus_tag="BURK_07136" /note="COG0784 FOG: CheY-like receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver domain-containing protein" /protein_id="imtech:BURK_07136" /translation="MPFSKLFQRAPRPWTARRVPLNQARLRVLVVDDNHDAALAMTVY LSLEDIESRAVFGGRDAIDLAPEWAPHIILMDIQMPACNGIEAARMLRRDPRTNHIAI IAYTALDETELRRQLVDDEFDGYLQKGRDLSQLIQLLKTFTQADGTGSGTRAGGVA" gene complement(2042..2353) /locus_tag="BURK_07141" CDS complement(2042..2353) /locus_tag="BURK_07141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="imtech:BURK_07141" /translation="MSDSDLHALALAVADCAQFSSLIRRALGKQQYEKTESTLCRDMS DLVGLVEWSLPLDMAQQSELNKARTYLALRRLDWALTCVDGVLQSVRTAIQDDCLPDS S" gene 2698..3009 /locus_tag="BURK_07146" CDS 2698..3009 /locus_tag="BURK_07146" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="imtech:BURK_07146" /translation="MPTKPPADSIIQADTALLALEALEELVITVNFDRDDPASVEAAI QTVEASIDTAVAAYRGHPMVESAVAELKAECRAGLYEQAERVDAFIPGMSASPKKPTL H" gene 3204..3965 /locus_tag="BURK_07151" CDS 3204..3965 /locus_tag="BURK_07151" /note="COG4974 Site-specific recombinase XerD" /codon_start=1 /transl_table=11 /product="integrase/recombinase XerD" /protein_id="imtech:BURK_07151" /translation="MQPLHVAAWIELQTQTLSAPTVKLRLAAIRHLFDWLVTGQIVPH NPAASVRGPSHTAKKGKTPVLDASEARQLLDSIDVSTPIGLRDRALIALMVFSFARVG AALAMRVDDVYVQQRRLWVRLREKGGKAHAMPCHHTLEAYLHDYLDQTGLRDEPKGPL FRTITRGTGQLSKTPLPQANAYAMVRRRAVAAGIDTPIGNHTFRATGITTYLKNGGTL ENAAVMANHASTRTTQFYDRRCDDISLDEVERILL" gene 4118..4396 /locus_tag="BURK_07156" CDS 4118..4396 /locus_tag="BURK_07156" /note="COG3549 Plasmid maintenance system killer protein" /codon_start=1 /transl_table=11 /product="plasmid maintenance system killer" /protein_id="imtech:BURK_07156" /translation="MIKSWRHKGLEEFFKTESKAGIRPDHAARLKRQLARLDVAQSPH DMNVPGWKFHGLEGPLAGHYAISVNGNWRMTFTFEGTDAVLVDYQDYH" gene 4407..4703 /locus_tag="BURK_07161" CDS 4407..4703 /locus_tag="BURK_07161" /note="COG3093 Plasmid maintenance system antidote protein" /codon_start=1 /transl_table=11 /product="putative plasmid maintenance system antidote protein" /protein_id="imtech:BURK_07161" /translation="MTQMFNPPHPGETLREDILPELGLTVTQAAEQLGVTRVALSRVL NEHAGISPEMALRIEGWLGVENGGRADVWLAQQTAYDLWQARSKGTPKVERAHA" gene complement(4794..5564) /locus_tag="BURK_07166" CDS complement(4794..5564) /locus_tag="BURK_07166" /note="COG5527 Protein involved in initiation of plasmid replication" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="imtech:BURK_07166" /translation="MAGKAESYSAITDRPAGDRWISMSNALTRAGQGLTLAEKRIVAA AVSKLDSRRLPQVGELPVTRITAAEYADTFHVDANTAYEQLQSAAKTLYNRTITFYEA AHRRNGAPLPPTKVQMRWVGVIKYQVGEGWVELHWWPALLPHLTALKGQFTTYQLQQA SALRSIYSWRLLELLTRFKSTGWAEYDIEDFAAAMDATEKQRQNFNNIKRRIIEPAVA ELNEKDGWIIQWEQIKAGRKVKAVRFTFARDPQGRLEI" gene complement(6328..6825) /locus_tag="BURK_07171" CDS complement(6328..6825) /locus_tag="BURK_07171" /note="COG1192 ATPases involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="ParA family protein" /protein_id="imtech:BURK_07171" /translation="MRAESGRAPIAAAAYPDGATLRAQVTQQASAYDHVIIDAGGRDS TALRAALTVSDLMLVPFQPRSFDVWALSDVASLLREARSVRDVRALALLNAADPQGSD NEEASEALADIEGIELLPLRIGRRKAFASASGAGLHIDEYRPRDVNASTELSALKNHL VSILK" gene complement(7082..7336) /locus_tag="BURK_07176" CDS complement(7082..7336) /locus_tag="BURK_07176" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="imtech:BURK_07176" /translation="MSSKPEFTTAHRLPKGSVWKVKTELVGGTRLEGLSDPADALPRL KISPEAFEALKGLRSRGETIREVVERLIFLAAEQANNQPR" ORIGIN 1 cccatcaacc ccaaggccgc aaagcggtca tggacctgct tttgggctgc gcgcgctgtc 61 gtcgcgtcga ctaggtatgg ccgcgtcatc gtaacttcca acgccgcttt gactgcggct 121 aaggcgcgat cccggtaggg cgttgggatg accgtatccc tcacgcgtcc gcccttggtg 181 ccgtggcgga tcgtgatgaa gctttgccca cgcgcgagcg ccgcctccca ttgcttcagg 241 ctcttgtgac tttcaatcat ctcctcgcgc cgcaggccca ggcagcgctc gagttggatc 301 caggctcggg tgtcggccgg tgcatgctcg agggcgtgtt cgagcacgtg cgcgtcgacc 361 acgagaccgg tgccgacgcg cgtgccaacc ggcacgccaa gctgtgcatt ggtgacggca 421 tccgcccagt cgcctcggcc ggcgccgcgc aaggcgcggc gcagatggct cacttcgttc 481 tggatcgtgc gcggcgtgat gccggcctcg atgcgcgcac cgacataatt gcgaagctgc 541 ttttccgtga cggtggcagg ttcgacatcg ccataacgcc gctgcctggc atgtgcagcg 601 aacgccttga aagtcgtcag catcttctgc tgggtcaggg tcgcagcccc cttgtgaagc 661 gatgcagcca tgaacttcgc ttcgatcgag cgcggctgcg atcgcgatcg gttcggtaat 721 gacgtggact tgttcatctc ttctttgttg gtcttgtttg tcgttgtgtt gcaccggaac 781 gctccagcga gccgggtcct gcctttgttt agggaactgt gggccgccac ctggaggtgg 841 gttgtcgtgg ccggggtgct gctgccgatg aggtcgtttg tcgttcgccg gttggccggt 901 tcgacgcgct gacgtgcgct taactatcac gtcatgagac gggcgccttg cgtggtgcgg 961 gcgggagggg tgcgcgagag cgcgtcactg ctcctcgatg cgaagcagtg acgcgcaaaa 1021 ccatgtggtt gcctcggcgg atgctcccaa tgatcgggcc gcggaaggcg gtgaagtcac 1081 cgcatcttgc ttgctgcgtt tgctgtcggc acagcaaacg ggaagcgcgg acgcgatgcg 1141 ctagctgggc tgctcgttgg cagccgaaag acgaggtaag ttcgagcttg gtggctcgta 1201 ggaacgtgat gcgcgggcaa agcccgagat ggaaaagtgc ttgcgcttgc gatggacgga 1261 ctacgacagc cccgccgaag cgccacgaaa aaatcgctca gggggctgtg cagggcggac 1321 gaatccgatg tacttgccgt aagcggtttg cgggcaaagt gcccggctta agaagtagga 1381 tcaggctcga agccgatcgt aggtcgatgc gtcagggacg caggaacgcc gctacgttag 1441 cacagcagtt ttcgtctgac cagtcaggtg gtcgcacgtg gtttcttacg atgccgatca 1501 gctggtcttt cgaagctagg caacgcctcc cgcacgggta cctgatcccg tgccatcggc 1561 ctgagtgaaa gtcttgagca gctggatcaa ctgactgaga tctcgacctt tttgcaggta 1621 gccgtcgaac tcgtcatcga ccaactggcg gcgcagttcg gtttcgtcca gcgcggtata 1681 ggcgatgatc gcgatgtggt tggtccgcgg atcacgccgc agcatgcgag ccgcctcgat 1741 gccattgcat gctggcatct ggatgtccat taggatgata tggggtgccc attcgggcgc 1801 cagatcgatg gcgtcgcgac cgccgaaaac agcacgtgac tcgatgtcct ccagcgacag 1861 atagaccgtc atggccaagg ctgcatcgtg gttgtcatcg accacgagga cgcgcagtct 1921 ggcttgattg agtggcactc gtcgcgcggt ccacggtcgg ggcgcccgct gaaacaattt 1981 cgaaaacggc atgaactctc cagtgcgccc tatcgataga tagcgcaccg accatgcccg 2041 cctacgagga gtccggtaag caatcgtcct gaatcgccgt ccggacgctt tgaaggacgc 2101 catccacgca agtcagtgcc cagtccagcc gtcgcagtgc caggtaggtg cgcgccttgt 2161 ttaattcgct ctgctgcgcc atgtcgaggg gcaggctcca ctcgacgagt cccacgaggt 2221 cggacatgtc acggcaaagc gtactttctg ttttttcgta ttgctgcttg cccaacgcgc 2281 gtcgaatcaa ggatgagaat tgggcgcagt cggccacagc aagggcaagc gcatgcaggt 2341 cagagtccga cataatgagt agccgaaacg tgattcacgc aacccgccga cgctagcgca 2401 cttcgtgccg ttttataagg cgctcggcgc gtccgaattg cgtgcacaac ggtcgcgcca 2461 atacgtatcg tccttctata tatttgataa tgtcctttat cagatatatg cggcgctcgc 2521 ctggcgccag cgacaggcgg ggcgtcgtgt gtggcttagg tgggcgacac gagcaaagaa 2581 atgtgcacgc ttgccgatct cgaccagctg cttgaacaag cgcagcgtca attgggcgtg 2641 cgaaaaggcg gcagccaaca acctaacttt tgatcacaga ccttggtaga tcaccgtatg 2701 cccaccaaac cacccgccga ttcgatcatc caagccgaca cggcgttgct tgcgcttgaa 2761 gcgcttgagg aactcgttat cacggtgaat ttcgatcgtg atgaccccgc gagtgtcgag 2821 gcagccattc aaaccgtcga ggcatcgatc gataccgccg tagccgccta tcgtggccac 2881 cccatggttg aatcagccgt ggctgagtta aaagccgagt gtcgggcggg tctctatgag 2941 caagctgagc gcgtggacgc cttcataccc ggtatgtcgg ctagtcccaa aaaaccgaca 3001 ttgcactgac gggctcaatg gacctaatcg tcgctacctc tgccccatcg cttgttctcg 3061 cggccggaga gcgggccagt attcgcttcc tcgagttttt tgcttcagcc atccgcaatc 3121 cgcatacgcg gcgggcgtat gcgcgggcgg caggggattt tctggcttgg tgcgccagcg 3181 cgggcgtggc ctccatcacg gctgtgcagc cgctgcacgt cgccgcgtgg atcgagctgc 3241 agacgcagac cttatcggcg ccaaccgtca agctgcggct ggcggcgatc cgccacctgt 3301 tcgactggct cgtgaccggc cagattgtgc cgcacaaccc ggccgcgtca gtgcgcggcc 3361 cgagtcatac agccaagaaa ggaaagacgc cggtgctcga tgcgagcgag gcgcgacagc 3421 tgctcgacag catcgatgtg tcgacgccaa ttggcttgcg cgaccgggcg ctgattgcgc 3481 tgatggtgtt ttcgtttgcg cgggtgggcg ccgcgctggc gatgcgggtg gacgacgtct 3541 atgtacagca gcggcgcctg tgggtgcgct tgcgtgaaaa aggcggcaaa gcgcacgcga 3601 tgccctgtca tcacacactg gaggcgtatc tgcatgacta tctcgaccag acggggctac 3661 gcgatgagcc gaagggaccg ctgtttcgca cgattacgcg tggcactggc cagctgagca 3721 agacgccact gccgcaggcg aacgcctatg cgatggtgcg gcgccgggca gtagcggctg 3781 ggatcgatac cccgatcggc aatcacacgt tccgcgcgac cggcatcacc acctatctca 3841 aaaacggcgg cacgctcgag aacgccgcgg tgatggccaa tcacgcatcg acgcgcacca 3901 cccagttcta tgaccggcgc tgcgacgaca tcagcctcga tgaggtcgag cgaatcctgc 3961 tctaacagcc gaagacccac attgactctg taaacgccgc aatgtacagt gtaactatac 4021 gctatacatg atgttcatca ggcaagacca actgactaat tgacgtgact tttagagagg 4081 taagagatgg gatctaacca ctttgattgg gagcaccatg atcaagtcat ggcgacacaa 4141 aggactcgaa gagttcttca agaccgaaag taaggcgggc atcagacccg accatgcagc 4201 cagattaaag cgtcagttag ctcggctcga tgtggctcag tcgccgcatg atatgaatgt 4261 gccgggctgg aagtttcacg gattggaagg gccgttagcc ggtcattacg ctatcagcgt 4321 gaatgggaac tggcggatga ccttcacatt cgaaggtact gacgctgtct tggtggacta 4381 ccaggactac cactaaggtt cagtacatga cccaaatgtt taacccgcct cacccgggtg 4441 aaacgctccg ggaggatatc ctcccggagc ttggtttgac agtgactcaa gcggccgagc 4501 agctcggtgt cacgcgcgtg gcgttgtcac gcgtgctgaa cgagcacgca ggtatctcgc 4561 cagaaatggc ccttcggatc gaaggttggc tcggtgtcga gaatggcggc cgcgcagacg 4621 tgtggctggc ccagcagacc gcctatgacc tttggcaggc acgctccaag ggaacgccca 4681 aggtcgagcg cgcgcacgcg tgagcttggc ttcgacgatc aaggccgctc ggcacctttt 4741 gtcattcctc cggctgccgc tagccgcgtc gtatgaggcg atcggtaatt gcctcagatt 4801 tcaagccggc cttgcgggtc gcgtgcaaag gtaaatcgca cagccttgac cttccgcccg 4861 gccttgatct gctcccactg gataatccat ccgtctttct cgttgagttc agcaacggcc 4921 ggctcgataa ttcgccgttt gatgttgttg aaattctggc gctgcttctc agtcgcgtcc 4981 atcgcggccg cgaagtcctc tatgtcgtat tcagcccagc cagtggattt gaagcgcgta 5041 agcagttcga gcagccgcca agaataaatc gagcgcaatg cagacgcttg ctgcaattgg 5101 tacgtagtga actgcccctt caatgccgtc agatggggga gcagtgccgg ccaccagtgc 5161 aactcaaccc acccctcgcc cacttgatat ttgatgaccc cgacccatcg catttgaacc 5221 ttcgttggtg gcaacggggc gccattgcga cgatgcgcgg cctcatagaa ggtgatggtg 5281 cggttgtaga gcgtcttggc cgctgattgg agctgttcgt atgcggtgtt cgcgtcaaca 5341 tggaaggtgt cggcatactc tgcagctgtt atccgggtca caggcaactc gccgacttgt 5401 ggcaagcgcc gactgtcaag cttgctgacg gcggctgcca caatgcgctt ctcggccagc 5461 gtgagcccct gccccgctcg cgtcagcgcg ttgctcatcg agatccaccg atcgcccgct 5521 ggcctgtccg tgatcgccga atagctctcc gctttccctg ccattttcac ccctaaagcg 5581 tcatccggcg actctgacgc atatctctaa ttgcgtcaac aaaatatcaa gacgcaatag 5641 cccggaaatt gacgcaattt agtggctacc agggcacgcc ggaagaaata agggagcgcg 5701 aaaatctttt gcatgggctg tggatagcgc ccggaaaaag acgcactaac ccggaaaaag 5761 acgcaattga cccggaaaaa gacgcaatag caggctgcaa acccttacgg cacaaggctc 5821 ccagccctct ataaacaaga aaaaactatc taaaaaccgg tggggacagg cattcagaac 5881 ttccccgtgt ggataagtcc cctgtccacc ggccaaaggc ccgtggacag ccgcggtgcg 5941 gttcgggact tccccacact tgagtctgac gcgcccttcg ggcttgcccc cattgagaga 6001 aacaaccgat tcaaaaccac ccgcaaaagt ccgacaggca gggaatagtc tgtctcgtca 6061 attttttgcg tcgcgctcga ccagctcggc gcatgcgagc gaaatcgtcg cagctcggct 6121 aaggcccttt cgtgccgcga gtgagtcgac tgtagcgagc aagtcggggg agatcgtaat 6181 ggcgatttga accttgtttt tccgtgctgg cgggctcgcg cttcgcgtcg cggcagcatc 6241 gggcgcgcgg ccgataaacg catttgccgc gggctcacta gcaacaggtt taggcttttt 6301 tgtgatggac ataatatatt ttcaatatta tttcaatatt gaaacgaggt gattttttaa 6361 tgcggatagt tcggtggatg cgttcacgtc gcgcggccgg tattcgtcga tgtggagccc 6421 cgccccgctc gcactggcga acgcttttcg ccgcccgatg cgcagcggca gcagctcgat 6481 gccttcaatg tcggcaagcg cctcactcgc ctcttcgttg tcgctgcctt gcggatcggc 6541 ggcattcagc agcgccagag ctcttacgtc gcgcacactg cgcgcctcgc gcaacaggct 6601 cgccacgtcc gacagcgccc aaacatcgaa tgaacgcggc tgaaacggca ccagcatgag 6661 atcggagact gttagcgccg cgcgtaatgc agtcgaatcg cgtccgcctg cgtcgatgat 6721 gacgtgatcg tatgcgctgg cctgctgcgt gacctgtgcg cgcagtgtcg cgccgtctgg 6781 gtatgcggcg gcggcgatcg gcgcccggcc actttccgcg cgcactgtaa tcgcgcccag 6841 gcttgtcccc tgtcgatcac cgtcgaccaa ccagacgcgc tgtccgtcga gtgcaagccc 6901 aagcgcgagc tggacggcga gggtcgattt gcctacgccg cctttagtgt tcccgatcgt 6961 tataatcata cttattctat attgtttcaa tattgaagac atattggcat aattttgaaa 7021 caataccacg gtatagagct ttgcgggcca gatcatcctt tggtgatgat ctgttctatc 7081 gtcagcgtgg ttggttgttg gcctgctcag cagcaaggaa gatcaaccgc tccaccacct 7141 cccggatcgt ctcaccgcga cttcgaagtc cttttagggc ttcgaacgcc tcgggcgaga 7201 tcttcaatct cggaagtgcg tcagccggat ccgaaagccc ttccaagcgt gtgccgccga 7261 ctagttcggt cttgaccttc cacacgctgc ccttcggcaa tcgatgagcg gtcgtgaatt 7321 caggtttgct gctcataggt cgctctcaga tagttgttcc aaacccagcg gccgcggccc 7381 tcaccgtggc ccagatcacg cgaacacaac gcgagcgctt cattgccgct atggccctcg 7441 ctcaagtagt gctcatagtt gtcacggcag aaagctcggc gtaacgcatg accggagtcc 7501 tta //