GenotrickA pipeline for whole genome assembly and annotation of Genomes

General

Genotrick

Important Links

Whole genome annotation


This module of Genotrick pipeline is designed to annotae whole genome of an organism from contigs (i.e. genomic fragments) or complete chromosomes.Whole genome annotation is performed with the help of PROKKA software, developed at VBC. User should provide assembled genome in form of contigs or whole chromosome. Annotated genome output is provided in different file formats. For more information, please clickHERE

To demostrate the server, please use the example input files.

Type/Paste the genome sequence for annotation
    

Or
Submit the genome file         

Organism type                        

Email Address                         

                   
      Example input file
Following is the input contig file (Example input).
Contig file
Example output Files
This is the contigs file generated after the assembly of input reads (i.e. paired end fastq reads) by this server at hash length 71 and coverage 60.Contigs generated



Note: Large amount of data processsing may be difficult at this server. User are advised to use standalone version for large data.