Pathways |
We have also annotated the genome of Rhodococcus imtechensis RKJ300 by KASS server. All CDSs (i.e. amino acid sequences) sequences have been submitted to KASS server. All KO I.Ds assigned at KASS were further mapped to KEGG database to map the genes in pathways. |
02010 | ABC transporters (81) | 00980 | Metabolism of xenobiotics by cytochrome P450 (4) |
04920 | Adipocytokine signaling pathway (3) | 00680 | Methane metabolism (34) |
05143 | African trypanosomiasis (1) | 04978 | Mineral absorption (1) |
00250 | Alanine, aspartate and glutamate metabolism (27) | 03430 | Mismatch repair (12) |
05034 | Alcoholism (1) | 00510 | N-Glycan biosynthesis (1) |
00592 | alpha-Linolenic acid metabolism (2) | 00626 | Naphthalene degradation (9) |
05010 | Alzheimer's disease (2) | 00760 | Nicotinate and nicotinamide metabolism (16) |
00520 | Amino sugar and nucleotide sugar metabolism (22) | 00910 | Nitrogen metabolism (36) |
00970 | Aminoacyl-tRNA biosynthesis (24) | 00633 | Nitrotoluene degradation (5) |
00627 | Aminobenzoate degradation (20) | 04621 | NOD-like receptor signaling pathway (1) |
05031 | Amphetamine addiction (1) | 03450 | Non-homologous end-joining (2) |
05014 | Amyotrophic lateral sclerosis (ALS) (2) | 00401 | Novobiocin biosynthesis (2) |
04612 | Antigen processing and presentation (1) | 03420 | Nucleotide excision repair (9) |
00590 | Arachidonic acid metabolism (2) | 00670 | One carbon pool by folate (13) |
00330 | Arginine and proline metabolism (42) | 00511 | Other glycan degradation (1) |
00053 | Ascorbate and aldarate metabolism (5) | 00190 | Oxidative phosphorylation (45) |
00791 | Atrazine degradation (5) | 00770 | Pantothenate and CoA biosynthesis (15) |
02030 | Bacterial chemotaxis (1) | 05200 | Pathways in cancer (2) |
03070 | Bacterial secretion system (11) | 00311 | Penicillin and cephalosporin biosynthesis (2) |
03022 | Basal transcription factors (1) | 00040 | Pentose and glucuronate interconversions (8) |
03410 | Base excision repair (14) | 00030 | Pentose phosphate pathway (20) |
00362 | Benzoate degradation (34) | 00550 | Peptidoglycan biosynthesis (15) |
00410 | beta-Alanine metabolism (14) | 04146 | Peroxisome (10) |
00312 | beta-Lactam resistance (1) | 00360 | Phenylalanine metabolism (28) |
01051 | Biosynthesis of ansamycins (1) | 00400 | Phenylalanine, tyrosine and tryptophan biosynthesis (17) |
01053 | Biosynthesis of siderophore group nonribosomal peptides (6) | 00940 | Phenylpropanoid biosynthesis (2) |
01057 | Biosynthesis of type II polyketide products (1) | 04070 | Phosphatidylinositol signaling system (2) |
01040 | Biosynthesis of unsaturated fatty acids (6) | 02060 | Phosphotransferase system (PTS) (5) |
01055 | Biosynthesis of vancomycin group antibiotics (1) | 00195 | Photosynthesis (8) |
00780 | Biotin metabolism (5) | 04151 | PI3K-Akt signaling pathway (2) |
00363 | Bisphenol degradation (4) | 04626 | Plant-pathogen interaction (3) |
05219 | Bladder cancer (1) | 00624 | Polycyclic aromatic hydrocarbon degradation (9) |
00650 | Butanoate metabolism (36) | 00523 | Polyketide sugar unit biosynthesis (3) |
00524 | Butirosin and neomycin biosynthesis (1) | 00860 | Porphyrin and chlorophyll metabolism (38) |
00660 | C5-Branched dibasic acid metabolism (6) | 03320 | PPAR signaling pathway (7) |
00232 | Caffeine metabolism (1) | 00120 | Primary bile acid biosynthesis (1) |
00930 | Caprolactam degradation (7) | 05340 | Primary immunodeficiency (2) |
00710 | Carbon fixation in photosynthetic organisms (12) | 05020 | Prion diseases (1) |
00720 | Carbon fixation pathways in prokaryotes (39) | 04914 | Progesterone-mediated oocyte maturation (1) |
00906 | Carotenoid biosynthesis (2) | 04917 | Prolactin signaling pathway (1) |
04112 | Cell cycle - Caulobacter (7) | 00640 | Propanoate metabolism (23) |
05142 | Chagas disease (American trypanosomiasis) (1) | 05215 | Prostate cancer (1) |
05204 | Chemical carcinogenesis (2) | 03050 | Proteasome (3) |
00625 | Chloroalkane and chloroalkene degradation (9) | 04974 | Protein digestion and absorption (1) |
00361 | Chlorocyclohexane and chlorobenzene degradation (13) | 03060 | Protein export (13) |
00020 | Citrate cycle (TCA cycle) (27) | 04141 | Protein processing in endoplasmic reticulum (3) |
05030 | Cocaine addiction (1) | 05205 | Proteoglycans in cancer (1) |
00460 | Cyanoamino acid metabolism (5) | 04964 | Proximal tubule bicarbonate reclamation (3) |
00270 | Cysteine and methionine metabolism (21) | 00230 | Purine metabolism (58) |
00473 | D-Alanine metabolism (2) | 00240 | Pyrimidine metabolism (36) |
00471 | D-Glutamine and D-glutamate metabolism (5) | 00620 | Pyruvate metabolism (33) |
00621 | Dioxin degradation (9) | 05211 | Renal cell carcinoma (1) |
03030 | DNA replication (12) | 04614 | Renin-angiotensin system (1) |
04728 | Dopaminergic synapse (1) | 00830 | Retinol metabolism (3) |
00982 | Drug metabolism - cytochrome P450 (6) | 00740 | Riboflavin metabolism (8) |
00983 | Drug metabolism - other enzymes (5) | 03010 | Ribosome (51) |
05120 | Epithelial cell signaling in Helicobacter pylori infection (1) | 03008 | Ribosome biogenesis in eukaryotes (2) |
04915 | Estrogen signaling pathway (1) | 04622 | RIG-I-like receptor signaling pathway (1) |
00565 | Ether lipid metabolism (2) | 03018 | RNA degradation (12) |
00642 | Ethylbenzene degradation (4) | 03020 | RNA polymerase (4) |
04975 | Fat digestion and absorption (1) | 05132 | Salmonella infection (2) |
00061 | Fatty acid biosynthesis (8) | 00450 | Selenocompound metabolism (10) |
00071 | Fatty acid metabolism (19) | 04726 | Serotonergic synapse (1) |
00364 | Fluorobenzoate degradation (11) | 00600 | Sphingolipid metabolism (2) |
00790 | Folate biosynthesis (13) | 00500 | Starch and sucrose metabolism (26) |
00051 | Fructose and mannose metabolism (12) | 00100 | Steroid biosynthesis (1) |
04727 | GABAergic synapse (3) | 00984 | Steroid degradation (12) |
00052 | Galactose metabolism (13) | 00140 | Steroid hormone biosynthesis (3) |
00281 | Geraniol degradation (7) | 00945 | Stilbenoid, diarylheptanoid and gingerol biosynthesis (1) |
04724 | Glutamatergic synapse (2) | 00521 | Streptomycin biosynthesis (7) |
00480 | Glutathione metabolism (10) | 00643 | Styrene degradation (8) |
00561 | Glycerolipid metabolism (10) | 00920 | Sulfur metabolism (14) |
00564 | Glycerophospholipid metabolism (13) | 04122 | Sulfur relay system (7) |
00260 | Glycine, serine and threonine metabolism (39) | 00072 | Synthesis and degradation of ketone bodies (6) |
00010 | Glycolysis / Gluconeogenesis (29) | 00430 | Taurine and hypotaurine metabolism (9) |
00603 | Glycosphingolipid biosynthesis - globo series (1) | 00900 | Terpenoid backbone biosynthesis (12) |
00630 | Glyoxylate and dicarboxylate metabolism (23) | 00253 | Tetracycline biosynthesis (3) |
04640 | Hematopoietic cell lineage (1) | 00730 | Thiamine metabolism (10) |
04066 | HIF-1 signaling pathway (4) | 00623 | Toluene degradation (18) |
00340 | Histidine metabolism (19) | 00960 | Tropane, piperidine and pyridine alkaloid biosynthesis (3) |
03440 | Homologous recombination (20) | 00380 | Tryptophan metabolism (16) |
05016 | Huntington's disease (2) | 05152 | Tuberculosis (7) |
00901 | Indole alkaloid biosynthesis (1) | 02020 | Two-component system (43) |
00562 | Inositol phosphate metabolism (9) | 04940 | Type I diabetes mellitus (2) |
04910 | Insulin signaling pathway (2) | 04930 | Type II diabetes mellitus (1) |
00950 | Isoquinoline alkaloid biosynthesis (2) | 00350 | Tyrosine metabolism (19) |
05134 | Legionellosis (4) | 00130 | Ubiquinone and other terpenoid-quinone biosynthesis (10) |
00903 | Limonene and pinene degradation (13) | 00290 | Valine, leucine and isoleucine biosynthesis (11) |
00591 | Linoleic acid metabolism (2) | 00280 | Valine, leucine and isoleucine degradation (20) |
00785 | Lipoic acid metabolism (2) | 05111 | Vibrio cholerae pathogenic cycle (1) |
00540 | Lipopolysaccharide biosynthesis (3) | 05203 | Viral carcinogenesis (1) |
00300 | Lysine biosynthesis (14) | 00750 | Vitamin B6 metabolism (6) |
00310 | Lysine degradation (8) | 00622 | Xylene degradation (15) |
04142 | Lysosome (1) | 00908 | Zeatin biosynthesis (1) |
04113 | Meiosis - yeast (2) |