Pathways

We have also annotated the genome of Rhodococcus imtechensis RKJ300 by KASS server. All CDSs (i.e. amino acid sequences) sequences have been submitted to KASS server. All KO I.Ds assigned at KASS were further mapped to KEGG database to map the genes in pathways.

02010 ABC transporters (81) 00980 Metabolism of xenobiotics by cytochrome P450 (4)
04920 Adipocytokine signaling pathway (3) 00680 Methane metabolism (34)
05143 African trypanosomiasis (1) 04978 Mineral absorption (1)
00250 Alanine, aspartate and glutamate metabolism (27) 03430 Mismatch repair (12)
05034 Alcoholism (1) 00510 N-Glycan biosynthesis (1)
00592 alpha-Linolenic acid metabolism (2) 00626 Naphthalene degradation (9)
05010 Alzheimer's disease (2) 00760 Nicotinate and nicotinamide metabolism (16)
00520 Amino sugar and nucleotide sugar metabolism (22) 00910 Nitrogen metabolism (36)
00970 Aminoacyl-tRNA biosynthesis (24) 00633 Nitrotoluene degradation (5)
00627 Aminobenzoate degradation (20) 04621 NOD-like receptor signaling pathway (1)
05031 Amphetamine addiction (1) 03450 Non-homologous end-joining (2)
05014 Amyotrophic lateral sclerosis (ALS) (2) 00401 Novobiocin biosynthesis (2)
04612 Antigen processing and presentation (1) 03420 Nucleotide excision repair (9)
00590 Arachidonic acid metabolism (2) 00670 One carbon pool by folate (13)
00330 Arginine and proline metabolism (42) 00511 Other glycan degradation (1)
00053 Ascorbate and aldarate metabolism (5) 00190 Oxidative phosphorylation (45)
00791 Atrazine degradation (5) 00770 Pantothenate and CoA biosynthesis (15)
02030 Bacterial chemotaxis (1) 05200 Pathways in cancer (2)
03070 Bacterial secretion system (11) 00311 Penicillin and cephalosporin biosynthesis (2)
03022 Basal transcription factors (1) 00040 Pentose and glucuronate interconversions (8)
03410 Base excision repair (14) 00030 Pentose phosphate pathway (20)
00362 Benzoate degradation (34) 00550 Peptidoglycan biosynthesis (15)
00410 beta-Alanine metabolism (14) 04146 Peroxisome (10)
00312 beta-Lactam resistance (1) 00360 Phenylalanine metabolism (28)
01051 Biosynthesis of ansamycins (1) 00400 Phenylalanine, tyrosine and tryptophan biosynthesis (17)
01053 Biosynthesis of siderophore group nonribosomal peptides (6) 00940 Phenylpropanoid biosynthesis (2)
01057 Biosynthesis of type II polyketide products (1) 04070 Phosphatidylinositol signaling system (2)
01040 Biosynthesis of unsaturated fatty acids (6) 02060 Phosphotransferase system (PTS) (5)
01055 Biosynthesis of vancomycin group antibiotics (1) 00195 Photosynthesis (8)
00780 Biotin metabolism (5) 04151 PI3K-Akt signaling pathway (2)
00363 Bisphenol degradation (4) 04626 Plant-pathogen interaction (3)
05219 Bladder cancer (1) 00624 Polycyclic aromatic hydrocarbon degradation (9)
00650 Butanoate metabolism (36) 00523 Polyketide sugar unit biosynthesis (3)
00524 Butirosin and neomycin biosynthesis (1) 00860 Porphyrin and chlorophyll metabolism (38)
00660 C5-Branched dibasic acid metabolism (6) 03320 PPAR signaling pathway (7)
00232 Caffeine metabolism (1) 00120 Primary bile acid biosynthesis (1)
00930 Caprolactam degradation (7) 05340 Primary immunodeficiency (2)
00710 Carbon fixation in photosynthetic organisms (12) 05020 Prion diseases (1)
00720 Carbon fixation pathways in prokaryotes (39) 04914 Progesterone-mediated oocyte maturation (1)
00906 Carotenoid biosynthesis (2) 04917 Prolactin signaling pathway (1)
04112 Cell cycle - Caulobacter (7) 00640 Propanoate metabolism (23)
05142 Chagas disease (American trypanosomiasis) (1) 05215 Prostate cancer (1)
05204 Chemical carcinogenesis (2) 03050 Proteasome (3)
00625 Chloroalkane and chloroalkene degradation (9) 04974 Protein digestion and absorption (1)
00361 Chlorocyclohexane and chlorobenzene degradation (13) 03060 Protein export (13)
00020 Citrate cycle (TCA cycle) (27) 04141 Protein processing in endoplasmic reticulum (3)
05030 Cocaine addiction (1) 05205 Proteoglycans in cancer (1)
00460 Cyanoamino acid metabolism (5) 04964 Proximal tubule bicarbonate reclamation (3)
00270 Cysteine and methionine metabolism (21) 00230 Purine metabolism (58)
00473 D-Alanine metabolism (2) 00240 Pyrimidine metabolism (36)
00471 D-Glutamine and D-glutamate metabolism (5) 00620 Pyruvate metabolism (33)
00621 Dioxin degradation (9) 05211 Renal cell carcinoma (1)
03030 DNA replication (12) 04614 Renin-angiotensin system (1)
04728 Dopaminergic synapse (1) 00830 Retinol metabolism (3)
00982 Drug metabolism - cytochrome P450 (6) 00740 Riboflavin metabolism (8)
00983 Drug metabolism - other enzymes (5) 03010 Ribosome (51)
05120 Epithelial cell signaling in Helicobacter pylori infection (1) 03008 Ribosome biogenesis in eukaryotes (2)
04915 Estrogen signaling pathway (1) 04622 RIG-I-like receptor signaling pathway (1)
00565 Ether lipid metabolism (2) 03018 RNA degradation (12)
00642 Ethylbenzene degradation (4) 03020 RNA polymerase (4)
04975 Fat digestion and absorption (1) 05132 Salmonella infection (2)
00061 Fatty acid biosynthesis (8) 00450 Selenocompound metabolism (10)
00071 Fatty acid metabolism (19) 04726 Serotonergic synapse (1)
00364 Fluorobenzoate degradation (11) 00600 Sphingolipid metabolism (2)
00790 Folate biosynthesis (13) 00500 Starch and sucrose metabolism (26)
00051 Fructose and mannose metabolism (12) 00100 Steroid biosynthesis (1)
04727 GABAergic synapse (3) 00984 Steroid degradation (12)
00052 Galactose metabolism (13) 00140 Steroid hormone biosynthesis (3)
00281 Geraniol degradation (7) 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis (1)
04724 Glutamatergic synapse (2) 00521 Streptomycin biosynthesis (7)
00480 Glutathione metabolism (10) 00643 Styrene degradation (8)
00561 Glycerolipid metabolism (10) 00920 Sulfur metabolism (14)
00564 Glycerophospholipid metabolism (13) 04122 Sulfur relay system (7)
00260 Glycine, serine and threonine metabolism (39) 00072 Synthesis and degradation of ketone bodies (6)
00010 Glycolysis / Gluconeogenesis (29) 00430 Taurine and hypotaurine metabolism (9)
00603 Glycosphingolipid biosynthesis - globo series (1) 00900 Terpenoid backbone biosynthesis (12)
00630 Glyoxylate and dicarboxylate metabolism (23) 00253 Tetracycline biosynthesis (3)
04640 Hematopoietic cell lineage (1) 00730 Thiamine metabolism (10)
04066 HIF-1 signaling pathway (4) 00623 Toluene degradation (18)
00340 Histidine metabolism (19) 00960 Tropane, piperidine and pyridine alkaloid biosynthesis (3)
03440 Homologous recombination (20) 00380 Tryptophan metabolism (16)
05016 Huntington's disease (2) 05152 Tuberculosis (7)
00901 Indole alkaloid biosynthesis (1) 02020 Two-component system (43)
00562 Inositol phosphate metabolism (9) 04940 Type I diabetes mellitus (2)
04910 Insulin signaling pathway (2) 04930 Type II diabetes mellitus (1)
00950 Isoquinoline alkaloid biosynthesis (2) 00350 Tyrosine metabolism (19)
05134 Legionellosis (4) 00130 Ubiquinone and other terpenoid-quinone biosynthesis (10)
00903 Limonene and pinene degradation (13) 00290 Valine, leucine and isoleucine biosynthesis (11)
00591 Linoleic acid metabolism (2) 00280 Valine, leucine and isoleucine degradation (20)
00785 Lipoic acid metabolism (2) 05111 Vibrio cholerae pathogenic cycle (1)
00540 Lipopolysaccharide biosynthesis (3) 05203 Viral carcinogenesis (1)
00300 Lysine biosynthesis (14) 00750 Vitamin B6 metabolism (6)
00310 Lysine degradation (8) 00622 Xylene degradation (15)
04142 Lysosome (1) 00908 Zeatin biosynthesis (1)
04113 Meiosis - yeast (2)