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MitPred (Ver 2.0)
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Institute of Microbial Technology


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References


  1. Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. & Walter, P. (2000). Molecular Biology of Cell. Fourth edition. Garland science, New York.

  2. Bannai, H., Tamada, Y., Maruyama, O., Nakai, K. & Miyano, S. (2002). Extensive feature detection of N-terminal protein sorting signals. Bioinformatics18, 298-305.

  3. Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C. & Eddy, S. R. (2004 ). The Pfam protein families database. Nucl Acids Res. 32, D138-D141.

  4. Bender, A., vanDooren, G. G., Ralph, S. A., McFadden, G. I. & Schneider, G. (2003). Properties and prediction of mitochondrial transit peptides from Plasmodium falciparum. Mol Biochem Parasitol. 132, 59-66.

  5. Bhasin, M. & Raghava, G. P. (2004). ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST. Nucl Acids Res. 32, W414-W419.

  6. Cokol, M., Nair, R. & Rost, B. (2000). Finding nuclear localization signals. EMBO Rep. 1, 411-415.

  7. Emanuelsson, O., Nielsen, H., Brunak, S. & Heijne, G. (2000). Predicting subcellular localization of proteins based on their N-terminal. amino acid sequence. J. Mol. Biol. 300, 1005-1016.

  8. Fujiwara, Y., Asogawa, M. & Nakai, K. (1997). Prediction of Mitochondrial Targeting Signals Using Hidden Markov Model. Genome Inform Ser Workshop Genome Inform. 8, 53-60.

  9. Garg, A., Bhasin, M. & Raghava, G. P. (2005). Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J Biol Chem. 280, 14427-14432.

  10. Gottlieb, R. A. (2000). Role of mitochondria in apoptosis. Crit Rev Eukaryot Gene Expr. 10, 231-239.

  11. Guda,C., Fahy, E. & Subramaniam, S. (2004). MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20, 1785-1794.

  12. Jassem, W., Fuggle, S. V., Rela, M., Koo, D. D. & Heaton, N. D. (2002). The role of mitochondria in ischemia/reperfusion injury. Transplantation 73, 493-499.

  13. Joachims, T.Making large-Scale SVM Learning Practical. In: B Scholkopf and C Burges and A Smola, (eds) Advances in Kernel methods - support vector learning. (1999). MIT Press, Cambridge massachusetts, London England.

  14. Nakai, K. & Horton, P. (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci. 24, 34-36.

  15. Orth, M. & Schapira, A. H. (2002). Mitochondrial involvement in Parkinson's disease. Neurochem Int. 40, 533-541.

  16. Reinhardt, A. & Hubbard, T. (1998). Using neural networks for prediction of the subcellular location of proteins. Nucl Acids Res. 26, 2230-2236.

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