Strain Card


The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
StrainM_africanum_GM041182
DescriptionMycobacterim africanum is most commonly found in West African countries and its symptoms of infection are similar to those of M. tuberculosis. Infection by M. africanum is an important opportunistic infection in immunocompromised patients, such as those with HIV. It was sequenced by Sanger, and has x genes.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3830
B cell epitopes (IEDB)0
T cell epitopes (IEDB)0
MHC binder (IEDB)0
No. of Vaccine Target133
B cell prediction (LBtope)4091
Prediction of MHC class II binders (Propred)7523
MHC class I prediction (Propred1)35178
CTL epitope prediction (CTLpred)8313
Prediction of Interferon-gamma inducing peptides (IFNepitope)21184
Prediction of IL4 inducing peptides (IL4pred)33192