Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionIt is Mexico variant of BCG vaccine strain
CategoryVaccine strain
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3952
B cell epitopes (IEDB)86
T cell epitopes (IEDB)207
MHC binder (IEDB)345
No. of Vaccine Target133
B cell prediction (LBtope)4235
Prediction of MHC class II binders (Propred)8073
MHC class I prediction (Propred1)37320
CTL epitope prediction (CTLpred)8818
Prediction of Interferon-gamma inducing peptides (IFNepitope)22644
Prediction of IL4 inducing peptides (IL4pred)35022