Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionIt is a variant of BCG vaccine strain subcultured at Pasteur Institute.
CategoryVaccine strain
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3949
B cell epitopes (IEDB)88
T cell epitopes (IEDB)206
MHC binder (IEDB)348
No. of Vaccine Target134
B cell prediction (LBtope)4242
Prediction of MHC class II binders (Propred)8086
MHC class I prediction (Propred1)37377
CTL epitope prediction (CTLpred)8832
Prediction of Interferon-gamma inducing peptides (IFNepitope)22688
Prediction of IL4 inducing peptides (IL4pred)35070