Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThe sequences are related to the Mycobacterium canettii strain (EMBL accession number PRJEA68135) recently deposited by the Sanger Institute, which is also included in this collaborative project.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4009
B cell epitopes (IEDB)84
T cell epitopes (IEDB)199
MHC binder (IEDB)304
No. of Vaccine Target129
B cell prediction (LBtope)3930
Prediction of MHC class II binders (Propred)7698
MHC class I prediction (Propred1)35208
CTL epitope prediction (CTLpred)8452
Prediction of Interferon-gamma inducing peptides (IFNepitope)20887
Prediction of IL4 inducing peptides (IL4pred)32917