Strain Card


The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
StrainM_canettii_CIPT_140010059_3861
DescriptionThe sequences are related to the Mycobacterium canettii strain (EMBL accession number PRJEA68135) recently deposited by the Sanger Institute, which is also included in this collaborative project.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3861
B cell epitopes (IEDB)88
T cell epitopes (IEDB)198
MHC binder (IEDB)320
No. of Vaccine Target142
B cell prediction (LBtope)4507
Prediction of MHC class II binders (Propred)8701
MHC class I prediction (Propred1)40167
CTL epitope prediction (CTLpred)9543
Prediction of Interferon-gamma inducing peptides (IFNepitope)24041
Prediction of IL4 inducing peptides (IL4pred)37687