Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThe sequences are related to the Mycobacterium canettii strain (EMBL accession number PRJEA68135) recently deposited by the Sanger Institute, which is also included in this collaborative project.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3986
B cell epitopes (IEDB)85
T cell epitopes (IEDB)194
MHC binder (IEDB)304
No. of Vaccine Target128
B cell prediction (LBtope)4014
Prediction of MHC class II binders (Propred)7650
MHC class I prediction (Propred1)35081
CTL epitope prediction (CTLpred)8391
Prediction of Interferon-gamma inducing peptides (IFNepitope)21012
Prediction of IL4 inducing peptides (IL4pred)32864