Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain, also nicknamed Oshkosh, is a recent clinical isolate from a clothing factory worker from the Kentucky/Tennessee, USA, region. However, this strain has not caused epidemics in man and is sensitive to a wide range of drugs.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4189
B cell epitopes (IEDB)96
T cell epitopes (IEDB)227
MHC binder (IEDB)348
No. of Vaccine Target144
B cell prediction (LBtope)4693
Prediction of MHC class II binders (Propred)8586
MHC class I prediction (Propred1)39995
CTL epitope prediction (CTLpred)9470
Prediction of Interferon-gamma inducing peptides (IFNepitope)24187
Prediction of IL4 inducing peptides (IL4pred)37828