Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain (H37Ra; ATCC 25177) is an avirulent strain derived from its virulentparent strain H37 (isolated from a 19 year-old male patient with chronic pulmonary tuberculosis by Edward R. Baldwin in 1905)
CategoryAvirulent lab strain
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4034
B cell epitopes (IEDB)97
T cell epitopes (IEDB)235
MHC binder (IEDB)363
No. of Vaccine Target163
B cell prediction (LBtope)5248
Prediction of MHC class II binders (Propred)9608
MHC class I prediction (Propred1)44856
CTL epitope prediction (CTLpred)10557
Prediction of Interferon-gamma inducing peptides (IFNepitope)27226
Prediction of IL4 inducing peptides (IL4pred)42310