Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionM. tuberculosis strain KZN 605 was isolated from a patient in KwaZulu-Natal, South Africa. This strain is extensively drug-resistant (XDR).
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4001
B cell epitopes (IEDB)96
T cell epitopes (IEDB)230
MHC binder (IEDB)359
No. of Vaccine Target157
B cell prediction (LBtope)5175
Prediction of MHC class II binders (Propred)9484
MHC class I prediction (Propred1)44277
CTL epitope prediction (CTLpred)10442
Prediction of Interferon-gamma inducing peptides (IFNepitope)26781
Prediction of IL4 inducing peptides (IL4pred)41698