PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 2

Entry No. - 1   [TOP]
PolysacDB ID1119
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 3B10
Antibody type and classIgM
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation04-02-2010
References9116634


Entry No. - 2   [TOP]
PolysacDB ID1498
Carbohydrate NameCapsular polysaccharide   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
MicrobeCryptococcus neoformans Serotype A [strain 24064]   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe major component of C. neoformans capsular polysaccharide is glucurunoxylomannan [GXM] consisting of an unbranched mannose backbone substituted with xylose, glucuronic acid and O-acetyl residues
BCSDB StructureN/A
Proposed functionsC. neoformans has a large polysaccharide capsule that is a determinant of virulence. The capsular polysaccharide causes immunologic paralysis and inhibits phagocytosis by macrophages. Soluble C. neoformans capsular polysaccharide enhances human immunodeficiency virus [HIV] infection in cultured cells, suggesting a new pathogenic role in AIDS
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 3B10
Antibody type and classIgM
Assay SystemELISA
Cross-reactivityThis antibody reacted with 2 serotype A strains 24064 and 371
Proposed epitopesThis Mab did not bind to de-O-acetylated GXM from both serotype A strains. This shows that acetylated residues form an important part of the epitope
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation04-08-2010
References1583327


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036