PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2320
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeShigella flexneri serotype 1b   (NCBI Taxonomy)   (Drugpedia)
Basic StructureChemically, the O-antigen is a polysaccharide chain of variable length, built up by repetitive sequences of tetra- to hexasaccharides. It consists of a basic tetrasaccharide repeating unit consisting of three rhamnoses and one N-acetylglucosamine was common to all S. flexneri strains (except serotype 17): -2)-α-L-Rhap-(1-->2)-α-L-Rhap-(1-->3)-α-L-Rhap-(1-->3)-β[branched to α-D-Glcp(1-->4)]-D-GlcpNAc-(1-->
BCSDB Structure108641
Proposed functionsLPS plays an important virulence role based on its antiphagocytic and endotoxic properties
Antigenic Nature used to produce antibodiesHeat killed cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab MASF 111:6,7,8
Antibody type and classN/A
Assay SystemImmunoblotting, enzyme-linked immunosorbent assay (ELISA), hemagglutination, and coagglutination
Cross-reactivityThe type 111:6,7,8 O-antigen-specific antibodies were specific for S. flexneri serotype 3a
Proposed epitopesThese antibodies seemed to require the simultaneous presence of all three antigens for binding i.e. type III antigen and the group 6 and 7,8 antigens
IEDB Epitope76664
Proposed UtilityThis Mab can be used for detection and identification of shigella flexneri species
Curator IDAA + AS
Date of Curation01-04-2011
References2424839


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036