PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2288
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeShigella flexneri serotype 5   (NCBI Taxonomy)   (Drugpedia)
Basic StructureChemically, the O-antigen is a polysaccharide chain of variable length, built up by repetitive sequences of tetra- to hexasaccharides. It consists of a basic tetrasaccharide repeating unit consisting of three rhamnoses and one N-acetylglucosamine was common to all S. flexneri strains (except serotype 17): -2)-α-L-Rhap-(1-->2)-α-L-Rhap-(1-->3)-α-L-Rhap-(1-->3)-β-D-GlcpNAc-(1-->
BCSDB StructureN/A
Proposed functionsLPS plays an important virulence role based on its antiphagocytic and endotoxic properties
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab MASF V-3
Antibody type and classIgM
Assay SystemELISA
Cross-reactivityThis Mab's reactivity was exclusive for S. flexneri 5a and 5b LPS
Proposed epitopesα-D-Glc-(1-->3)-α-L-rhamnosyl residues seemed to be the part of the epitope
IEDB EpitopeN/A
Proposed UtilityThis Mab may prove to be valuable reagents in the studies of protective immunity against Shigella bacteria
Curator IDAA + AS
Date of Curation20-03-2011
References2437036


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036