PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID1045
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeSalmonella typhimurium SR-11   (NCBI Taxonomy)   (Drugpedia)
Basic StructureLPS is composed of three parts: (1) lipid A, (2) core polysaccharide, and (3) O antigen. The lipid A region contains two glucosamine sugar derivatives, each with three fatty acids and phosphate or pyrophosphate attached. The core polysaccharide has KDO and attached to lipid A. The side chain O is small polysaccharide chain extending outward from the core, it has several peculiar sugars and varies in composition between bacterial strains.
BCSDB StructureN/A
Proposed functionsLPS is most unusual constituents of outer membrane. It plays important role in host defence avoidance. LPS contributes to the negative charge of the bacterial surface. Lipid A is often toxic and act as endotoxin
Antigenic Nature used to produce antibodiesLive S.typhimurium SR cells.
Carrier NameNil
Conjugation MethodNil
AntibodiesST-1
Antibody type and classIgM
Assay SystemELISA Hemaggluttination assay
Cross-reactivityThis antibody was cross-reactive with Salmonella typhimurium LT-2, Salmonella typhimurium derby.
Proposed epitopesO-polysaccharide
IEDB EpitopeN/A
Proposed UtilityThis antibody can be used in serological assays to detect the desired antigen.
Curator IDAA + AS
Date of Curation13-01-2010
References6203984


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036