PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 8

Entry No. - 1   [TOP]
PolysacDB ID1112
Carbohydrate NameCapsular polysaccharide   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureN/A
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalinized whole cell antigen (WCA)
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 1.5C5F4
Antibody type and classIgM
Assay SystemELISA, immunoblotting
Cross-reactivityThis antibody specifically reacted with Serotype1 only
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis MAb could be useful for serotyping analysis in actinobacillus strains
Curator IDAA + AS
Date of Curation02-02-2010
References9249182


Entry No. - 2   [TOP]
PolysacDB ID1115
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 3E10
Antibody type and classIgG2b
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation03-02-2010
References9116634


Entry No. - 3   [TOP]
PolysacDB ID1116
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 4B7
Antibody type and classIgG2a
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation03-02-2010
References9116634


Entry No. - 4   [TOP]
PolysacDB ID1117
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 9H5
Antibody type and classIgG3
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation03-02-2010
References9116634


Entry No. - 5   [TOP]
PolysacDB ID1118
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 11C3
Antibody type and classIgM
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation04-02-2010
References9116634


Entry No. - 6   [TOP]
PolysacDB ID1119
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 3B10
Antibody type and classIgM
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation04-02-2010
References9116634


Entry No. - 7   [TOP]
PolysacDB ID1120
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 9Hl
Antibody type and classIgM
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1, 9 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1, 9 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1, 9 and 11
Curator IDAA + AS
Date of Curation05-02-2010
References9116634


Entry No. - 8   [TOP]
PolysacDB ID1121
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeActinobacillus pleuropneumoniae serotype 1 shope 4074   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe O-polsaccharide structure is as follows :
--6)-α-D-Glcp-(1-->2)-α-L-Rhap-(l-->2)-α-L-Rhap-(1--. which is linked to 1-D-GlcpNAc chains on its rhamnopyranosyl residue via 1-->3 linkage.
BCSDB StructureN/A
Proposed functionsLPS is an important virulence factor. It molecule plays an important role in adherence of the bacterium to porcine respiratory tract cells and mucus
Antigenic Nature used to produce antibodiesFormalin-fixed A. pleuropneumoniae serotype 1 cells (strain Shope 4074]
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 5D6
Antibody type and classIgM
Assay SystemELISA, Rapid Dot ELISA and Slide agglutination test
Cross-reactivityThis antibody cross-reacted with reference strains of serotypes 1 and 11
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab may provide reliable specific tools for rapid serological diagnosis of animals infected with serotypes 1 and 11 by inhibition or competition ELISA. Moreover, these mAbs could be useful as a complementary specific reagents to polyclonal sera for serotyping of field isolates belonging to A. pleuropneumoniae serotypes 1 and 11
Curator IDAA + AS
Date of Curation06-02-2010
References9116634


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036