PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 33

Entry No. - 1   [TOP]
PolysacDB ID2021
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin-killed P. aeruginosa cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab FK-2E7
Antibody type and classIgM
Assay SystemELISA, immunoblotting and flow cytometry
Cross-reactivityMab FK-2E7 bound to strains of Homma serotype E, strains of serotype M and to strains of serotype A and G
Proposed epitopesThis Mab reacted with the core region of the LPS
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation19-12-2010
References1564440


Entry No. - 2   [TOP]
PolysacDB ID2022
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin-killed P. aeruginosa cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab MH-4H7
Antibody type and classIgM
Assay SystemELISA, immunoblotting and flow cytometry
Cross-reactivityMab MH-4H7 bound to P. aeruginosa strains of serotype A, F, G, H, K and M, but did not bind to any strains of serotype B, C, E and I. This Mab also cross-reacted with E. coli 026 : B6 LPS
Proposed epitopesThis Mab reacted with the core region of the LPS. L-rhamnose in the LPS core of serotype G was an immunodominant sugar recognized by OM-1D6
IEDB EpitopeN/A
Proposed UtilityThis Mab showed a high level of protective activity against P.aeruginosa in an experimental infection model using normal mice
Curator IDAA + AS
Date of Curation19-12-2010
References1564440


Entry No. - 3   [TOP]
PolysacDB ID2023
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin-killed P. aeruginosa cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab OM-lD6
Antibody type and classIgM
Assay SystemELISA, immunoblotting and flow cytometry
Cross-reactivityThis Mab bound to P. aeruginosa strains. OM-1D6 reacted with all strains of serotype G so far tested, and a few strains of serotype M
Proposed epitopesThis Mab reacted with the core region of the LPS. L-rhamnose in the LPS core of serotype G was an immunodominant sugar recognized by OM-1D6
IEDB EpitopeN/A
Proposed UtilityThis Mab showed a high level of protective activity against P.aeruginosa in an experimental infection model using normal mice
Curator IDAA + AS
Date of Curation20-12-2010
References1564440


Entry No. - 4   [TOP]
PolysacDB ID2024
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin-killed P. aeruginosa cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab NM-3G8
Antibody type and classIgM
Assay SystemELISA, immunoblotting and flow cytometry
Cross-reactivityThis Mab bound to P. aeruginosa strains. NM-3G8 bound to only a few strains of serotype B and M
Proposed epitopesThis Mab reacted with the core region of the LPS
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation20-12-2010
References1564440


Entry No. - 5   [TOP]
PolysacDB ID2025
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 360.7
Antibody type and classIgG2b
Assay SystemELISA, flow cytometry, immunoblotting and immunogold electronmicroscopy
Cross-reactivityThe Mab cross-reacted with some of the other Pseudomonas spp such as P . Acidovorans, P.fluorescens, P. mendocina, P . pseudoalkaligenes, P. putida and P . stutzeri., but not with P. cepacia or Xanthomonas (Pseudomonas) maltophilia
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab can be used for an immunological assay for detection of P. aeruginosa in respiratory secretions of cystic fibrosis patients
Curator IDAA + AS
Date of Curation20-12-2010
References1588587


Entry No. - 6   [TOP]
PolysacDB ID2026
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 304.1.4
Antibody type and classIgG2b
Assay SystemELISA, flow cytometry, immunoblotting and immunogold electronmicroscopy
Cross-reactivityThe Mab cross-reacted with some of the other Pseudomonas spp such as P . Acidovorans, P.fluorescens, P. mendocina, P . pseudoalkaligenes, P. putida and P . stutzeri., but not with P. cepacia or Xanthomonas (Pseudomonas) maltophilia
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation21-12-2010
References1588587


Entry No. - 7   [TOP]
PolysacDB ID2027
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 73.5
Antibody type and classIgG1
Assay SystemELISA, flow cytometry, immunoblotting and immunogold electronmicroscopy
Cross-reactivityThe Mab cross-reacted with some of the other Pseudomonas spp such as P . Acidovorans, P.fluorescens, P. mendocina, P . pseudoalkaligenes, P. putida and P . Stutzeri and P. testosteroni but not with P. cepacia or Xanthomonas (Pseudomonas) maltophilia
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation21-12-2010
References1588587


Entry No. - 8   [TOP]
PolysacDB ID2028
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 61.32
Antibody type and classIgG3
Assay SystemELISA, flow cytometry, immunoblotting and immunogold electronmicroscopy
Cross-reactivityThe Mab cross-reacted with some of the other Pseudomonas spp such as P.fluorescens, P. mendocina, P . pseudoalkaligenes, P. putida and P . stutzeri., but not with P. cepacia or Xanthomonas (Pseudomonas) maltophilia
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation22-12-2010
References1588587


Entry No. - 9   [TOP]
PolysacDB ID2029
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 334.4
Antibody type and classIgG3
Assay SystemELISA, flow cytometry, immunoblotting and immunogold electronmicroscopy
Cross-reactivityThe Mab cross-reacted with some of the other Pseudomonas spp such as P . Acidovorans, P.fluorescens, P. mendocina, P . pseudoalkaligenes, P. putida and P . stutzeri., but not with P. cepacia or Xanthomonas (Pseudomonas) maltophilia
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation22-12-2010
References1588587


Entry No. - 10   [TOP]
PolysacDB ID2030
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P6-2A2
Antibody type and classIgG2a
Assay SystemELISA, immunoblotting, opsonophagocytic assay and in vivo protection assay
Cross-reactivityThis Mab reacted with strains Fisher IT-1, 06a,6b, and 06a,6d and did not react with strain 06a, 6c
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation22-12-2010
ReferencesPMC186240


Entry No. - 11   [TOP]
PolysacDB ID2031
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab LC3-2H2
Antibody type and classIgG1
Assay SystemELISA, immunoblotting, opsonophagocytic assay and in vivo protection assay
Cross-reactivityThis Mab reacted with strains Fisher IT-1, 06a,6b, and 06a,6d and 06a,6c
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation23-12-2010
ReferencesPMC186240


Entry No. - 12   [TOP]
PolysacDB ID2032
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab LBI-IC3
Antibody type and classIgG2a
Assay SystemELISA, immunoblotting, opsonophagocytic assay and in vivo protection assay
Cross-reactivityThis Mab reacted strongly with 06a,6b, weakly with 06a,6c, Fisher IT-l and Habs 06, and not at all with 06a, 6d
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation23-12-2010
ReferencesPMC186240


Entry No. - 13   [TOP]
PolysacDB ID2033
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab LD3-4D6
Antibody type and classIgM
Assay SystemELISA, immunoblotting, opsonophagocytic assay and in vivo protection assay
Cross-reactivityThis Mab reacted only with strain 06a,6d
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum
Curator IDAA + AS
Date of Curation23-12-2010
ReferencesPMC186240


Entry No. - 14   [TOP]
PolysacDB ID2034
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P6-1D2
Antibody type and classIgM
Assay SystemELISA, immunoblotting, opsonophagocytic assay and in vivo protection assay
Cross-reactivityThis Mab reacted strongly with Fisher IT-1 and Habs 06, weakly with 06a,6b, and not at all with 06a, 6c and 06a, 6d
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab demonstrated opsonophagocytic killing of 06 subtype strains in the presence of human peripheral blood leukocytes and fresh human serum. This Mab also showed in vivo protection
Curator IDAA + AS
Date of Curation23-12-2010
ReferencesPMC186240


Entry No. - 15   [TOP]
PolysacDB ID2035
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab KN-2B11
Antibody type and classIgM
Assay SystemCompetitive enzyme immunoassay, ELISA, immunoblotting
Cross-reactivity"This MAb specifically bound to clinical isolates belonging to Homma serotypes A, F, G and K at a frequency of 70 to 86% and to serotypes H and M isolates at about 50%. They did not bind to any isolates of serotype B, E, and I tested."
Proposed epitopesα-L-rhamnose residues in the outer core of LPS might be the part of the epitope.
IEDB EpitopeN/A
Proposed UtilityThis Mab agglutinated P. aeruginosa cells
Curator IDAA + AS
Date of Curation23-12-2010
ReferencesPMC313341


Entry No. - 16   [TOP]
PolysacDB ID2036
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab RM5
Antibody type and classIgM
Assay SystemELISA
Cross-reactivity"This Mab reacted specifically with P. aeruginosa Fisher immunotypes 2, 4, and 5"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab protected neutropenic mice prophylactically against challenge with P. aeruginosa immunotypes 2, 4, and 5,
Curator IDAA + AS
Date of Curation24-12-2010
ReferencesPMC259495


Entry No. - 17   [TOP]
PolysacDB ID2037
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab FDD7
Antibody type and classIgM
Assay SystemELISA
Cross-reactivity"This Mab reacted specifically with P. aeruginosa Fisher immunotypes 2, 4, and 5"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab protected neutropenic mice prophylactically against challenge with P. aeruginosa immunotypes 2, 4, and 5,
Curator IDAA + AS
Date of Curation24-12-2010
ReferencesPMC259495


Entry No. - 18   [TOP]
PolysacDB ID2038
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 11F9
Antibody type and classIgM
Assay SystemELISA
Cross-reactivity"This Mab reacted specifically with P. aeruginosa Fisher immunotypes 2, 4, and 5"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab protected neutropenic mice prophylactically against challenge with P. aeruginosa immunotypes 2, 4, and 5,
Curator IDAA + AS
Date of Curation25-12-2010
ReferencesPMC259495


Entry No. - 19   [TOP]
PolysacDB ID2039
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 9H10
Antibody type and classIgM
Assay SystemELISA
Cross-reactivity"This Mab recognized P. aeruginosa immunotypes 3, 6, and 7"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab protected against P. aeruginosa immunotypes 3 and 6 but did not protect against immunotype 7
Curator IDAA + AS
Date of Curation25-12-2010
ReferencesPMC259495


Entry No. - 20   [TOP]
PolysacDB ID2043
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesFormalin killed whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 18-19
Antibody type and classIgG3
Assay SystemELISA, immunoblotting, ouchterlony immunodiffusion
Cross-reactivity"This Mab cross-reacted with Serotypes O2, O5 and O16"
Proposed epitopesIn addition to the O-antigen part, this Mab also binds to the core region
IEDB Epitope76837
Proposed UtilityThis Mab helps us shed some light on the nature of O-specific and common epitopes in the LPS of P. aeruginosa
Curator IDAA + AS
Date of Curation26-12-2010
ReferencesPMC205836


Entry No. - 21   [TOP]
PolysacDB ID2045
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab PI-1
Antibody type and classIgG2a
Assay SystemELISA, Opsonophagocytic killing assay, Agglutination test.
Cross-reactivityThis Mab reacted with Homma standard serotype strain A
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab showed opsonophagocytic activity and agglutinating activity
Curator IDAA + AS
Date of Curation27-12-2010
References3141560


Entry No. - 22   [TOP]
PolysacDB ID2046
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P5-1
Antibody type and classIgG2b
Assay SystemELISA, Opsonophagocytic killing assay, Agglutination test.
Cross-reactivityThis Mab reacted with Homma standard serotype strain E
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab showed opsonophagocytic activity and agglutinating activity
Curator IDAA + AS
Date of Curation27-12-2010
References3141560


Entry No. - 23   [TOP]
PolysacDB ID2047
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P7-1
Antibody type and classIgG2b
Assay SystemELISA, Opsonophagocytic killing assay, Agglutination test.
Cross-reactivityThis Mab reacted with Homma standard serotype strain B
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab showed opsonophagocytic activity
Curator IDAA + AS
Date of Curation29-12-2010
References3141560


Entry No. - 24   [TOP]
PolysacDB ID2048
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P8-1
Antibody type and classIgG2b
Assay SystemELISA, Opsonophagocytic killing assay, Agglutination test.
Cross-reactivityThis Mab reacted with Homma standard serotype strain G
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab showed opsonophagocytic activity and agglutinating activity
Curator IDAA + AS
Date of Curation29-12-2010
References3141560


Entry No. - 25   [TOP]
PolysacDB ID2049
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab P10-1
Antibody type and classIgG2a
Assay SystemELISA, Opsonophagocytic killing assay, Agglutination test.
Cross-reactivityThis Mab reacted with Homma standard serotype strain I
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab showed opsonophagocytic activity and agglutinating activity
Curator IDAA + AS
Date of Curation29-12-2010
References3141560


Entry No. - 26   [TOP]
PolysacDB ID2050
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesHMab 2-8AH79
Antibody type and classIgM
Assay SystemELISA, immunoblotting, immunofluorescence, opsonophagocytic assays and mouse protection studies
Cross-reactivity"This Mab reacts with Fisher immunotype (IT) 1, 3, 4, and 6"
Proposed epitopesN/A
IEDB Epitope76837
Proposed UtilityThis Mab promoted the uptake and killing of IT-3 and IT-4 bacteria, but not IT-1 or IT-6 organisms, by human polymorphonuclear leukocytes. The passive transfer of HMAb 2-8AH79 to mice afforded significant protection only against a challenge with IT-3 and IT-4 bacteria
Curator IDAA + AS
Date of Curation30-12-2010
ReferencesPMC259916


Entry No. - 27   [TOP]
PolysacDB ID2052
Carbohydrate NameCell surface polysaccharide alginate   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureN/A
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesPurified alginate
Carrier NameNil
Conjugation MethodNil
AntibodiesMab F428
Antibody type and classIgG1
Assay SystemELISA and protection assays
Cross-reactivityN/A
Proposed epitopesIntact carboxylate groups on the C6 carbon of the mannuronic acid residues
IEDB EpitopeN/A
Proposed UtilityThis Mab was found to promote phagocytic killing of both mucoid and nonmucoid strains as well as conferred protection against both types of strains in a mouse model of acute pneumonia
Curator IDAA + AS
Date of Curation30-12-2010
References15494518


Entry No. - 28   [TOP]
PolysacDB ID2053
Carbohydrate NameCell surface polysaccharide alginate   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureN/A
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesPurified alginate
Carrier NameNil
Conjugation MethodNil
AntibodiesMab F429
Antibody type and classIgG1
Assay SystemELISA and protection assays
Cross-reactivityN/A
Proposed epitopesIntact carboxylate groups on the C6 carbon of the mannuronic acid residues
IEDB EpitopeN/A
Proposed UtilityThis Mab was found to promote phagocytic killing of both mucoid and nonmucoid strains as well as conferred protection against both types of strains in a mouse model of acute pneumonia
Curator IDAA + AS
Date of Curation30-12-2010
References15494518


Entry No. - 29   [TOP]
PolysacDB ID2054
Carbohydrate NameCell surface polysaccharide alginate   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureN/A
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesPurified alginate
Carrier NameNil
Conjugation MethodNil
AntibodiesMab F431
Antibody type and classIgG1
Assay SystemELISA and protection assays
Cross-reactivityN/A
Proposed epitopesIntact carboxylate groups on the C6 carbon of the mannuronic acid residues
IEDB EpitopeN/A
Proposed UtilityThis Mab was found to promote phagocytic killing of both mucoid and nonmucoid strains as well as conferred protection against both types of strains in a mouse model of acute pneumonia
Curator IDAA + AS
Date of Curation30-12-2010
References15494518


Entry No. - 30   [TOP]
PolysacDB ID2069
Carbohydrate NameOuter core oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesCore-LPS coated Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 101
Antibody type and classN/A
Assay SystemELISA and immunoblotting
Cross-reactivity"This Mab reacted with P. aeruginosa 02, 05, 07, 08, 010, 016, 018, 019, and 020 strains"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation06-01-2011
ReferencesPMC197099


Entry No. - 31   [TOP]
PolysacDB ID2070
Carbohydrate NameInner core oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesCore-LPS coated Whole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 7-4
Antibody type and classN/A
Assay SystemELISA and immunoblotting
Cross-reactivity"This Mab cross-reacted with all 20 P. aeruginosa serotypes as well as with other Pseudomonas species namely, P. acidovorans, P. chlororaphis, P. syringae, P.putida, P. aureofaciens, and P. stutzeri. MAb 7-4 did not react with other non-Pseudomonas gram negative organisms"
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation07-01-2011
ReferencesPMC197099


Entry No. - 32   [TOP]
PolysacDB ID2074
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHealthy or infected patients
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 2H9
Antibody type and classIgG1
Assay SystemELISA, opsonophagocytic assays, animal protection studies
Cross-reactivityN/A
Proposed epitopesN/A
IEDB EpitopeN/A
Proposed UtilityThis Mab had invivo protective capacity against experimental pseudomonas infection
Curator IDAA + AS
Date of Curation08-01-2011
ReferencesPMC187632


Entry No. - 33   [TOP]
PolysacDB ID2076
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHealthy adult human individual B cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab FKF-lF3
Antibody type and classIgM
Assay SystemELISA, immunoblotting, animal protection studies
Cross-reactivityThis Mab cross-reacted with N-acetyl-β-glucosamine- conjugated bovine serum albumin, N-acetyl-β-galactosamine-conjugated bovine serum albumin, myosin and actin, but not with other autoantigens such as ss- and ds-DNA, cardiolipin and glycosaminoglycans. This Mab bound to many serotype strains of P. aeruginosa namely, A, F, G and M serotypes, in addition to E. coli Rc type rough mutant, strain J5"
Proposed epitopesThis Mab recognised the outer core regions of some serotype strains and the O-polysaccharide region of serotype A strains. A carbohydrate structure containing N-acetylhexosamine residues, such as GlcNAc and GalNAc, was the most likely epitope for FKF-lF3
IEDB EpitopeN/A
Proposed UtilityThe mAb conferred protective activity against a mouse pseudomonal infection model. The mAb was a naturally occurring polyspecific antibody that participated in defense against pseudomonal infections
Curator IDAA + AS
Date of Curation10-01-2011
References8804973


Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036