PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613

Total Entries - 7
Entry No. - 1 [TOP]

PolysacDB ID	2582
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab C5
Antibody type and class	IgG1
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	07-07-2011
References	PMC184596

Entry No. - 2 [TOP]

PolysacDB ID	2583
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab C9
Antibody type and class	IgG3
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	08-07-2011
References	PMC184596

Entry No. - 3 [TOP]

PolysacDB ID	2584
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab D7
Antibody type and class	IgG3
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	08-07-2011
References	PMC184596

Entry No. - 4 [TOP]

PolysacDB ID	2585
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab E8
Antibody type and class	IgG3
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	08-07-2011
References	PMC184596

Entry No. - 5 [TOP]

PolysacDB ID	2586
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab E6
Antibody type and class	IgG3
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	08-07-2011
References	PMC184596

Entry No. - 6 [TOP]

PolysacDB ID	2587
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab G9
Antibody type and class	IgG1
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	09-07-2011
References	PMC184596

Entry No. - 7 [TOP]

PolysacDB ID	2588
Carbohydrate Name	O-polysaccharide (Drugpedia)
Carbohydrate Class	Lipopolysaccharide
Microbe	Rhizobium leguminosarum biovar trifolii strain 162X95 (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed functions	Structural modifications of Rhizobium LPS may play an important role in the adaptation of endosymbiotic rhizobia to the surrounding microenvironment
Antigenic Nature used to produce antibodies	Heat treated cells
Carrier Name	Nil
Conjugation Method	Nil
Antibodies	Mab E10
Antibody type and class	IgG3
Assay System	Competitive enzyme-linked immunosorbent assay, ELISA, immunoblotting
Cross-reactivity	This MAb to the O antigen of R. trifolii 162X95 has been shown to be specific for six strains of R. trifolii only
Proposed epitopes	N/A
IEDB Epitope	N/A
Proposed Utility	This Mab can be used for immunodetection of R. trifolii
Curator ID	AA + AS
Date of Curation	10-07-2011
References	PMC184596

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036