PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
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PolysacDB ID1037
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus fumigatus   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannan is composed of a branched core containing α(1-->2)- and α(1-->6)-linked mannose, with β(1-->5)galactofuranose and/or β(1-->4)galactopyranose moieties linked linearly in side chains terminated by galactofuranose nonreducing end units
BCSDB StructureN/A
Proposed FunctionGalactomannan is a major cell wall component in Aspergillusspecies and can also be secreted into the medium as a component of the exoantigen. The galactomannan is immunogenic and polyclonal antibodies against it have been used in antigen detection for the diagnosis of invasive aspergillosis, and in the detection of fungal contamination in foodstuffs
Antigenic NatureFormalinized spores of A. fumigatus.
Carrier NameN/A
Conjugate MethodN/A
AntibodiesMab EB-A2
Antibody Type ClassIgM
Assay SystemIndirect and Competitive ELISA
Cross ReactivityThis antibody cross-reacted to P. digitatum and Penicillium marneffei speices.
Proposed Epitope3(1-->5)galactofuranose residues of galactomannan
IEDB EpitopeN/A
Proposed UtilityEB-A2 has been used to detect circulating antigen in the serum of patients with invasive aspergillosis by ELISA inhibition. The sensitivity (95%), specificity (100%), positive predictive value (100%), and negative predictive value (99%)of the ELISA
Curator IDAA + AS
Date of Curation10-01-2010
ReferencesPMC257149

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PolysacDB ID1043
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus fumigatus   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannan is composed of a branched core containing α(1-->2)- and α(1-->6)-linked mannose, with β(1-->5)galactofuranose and/or β(1-->4)galactopyranose moieties linked linearly in side chains terminated by galactofuranose nonreducing end units
BCSDB StructureN/A
Proposed FunctionGalactomannan is a major cell wall component in Aspergillusspecies and can also be secreted into the medium as a component of the exoantigen. The galactomannan is immunogenic and polyclonal antibodies against it have been used in antigen detection for the diagnosis of invasive aspergillosis, and in the detection of fungal contamination in foodstuffs
Antigenic NatureCold alkali extract of mycelium
Carrier NameN/A
Conjugate MethodN/A
AntibodiesMab 40
Antibody Type ClassIgM
Assay SystemIndirect Enzyme Immunoassay, immunofluorescence, Preciptin assay
Cross ReactivityThis antibody was cross-reactive with C.albicans
Proposed EpitopeMannopyranosyl side chain
IEDB EpitopeN/A
Proposed UtilityThis antibody can be used to detect circulating antigen in the serum of patients with invasive aspergillosis by ELISA inhibition.
Curator IDAA + AS
Date of Curation13-01-2010
ReferencesPMC258783

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PolysacDB ID1044
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus fumigatus   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannan is composed of a branched core containing α(1-->2)- and α(1-->6)-linked mannose, with β(1-->5)galactofuranose and/or β(1-->4)galactopyranose moieties linked linearly in side chains terminated by galactofuranose nonreducing end units
BCSDB StructureN/A
Proposed FunctionGalactomannan is a major cell wall component in Aspergillusspecies and can also be secreted into the medium as a component of the exoantigen. The galactomannan is immunogenic and polyclonal antibodies against it have been used in antigen detection for the diagnosis of invasive aspergillosis, and in the detection of fungal contamination in foodstuffs
Antigenic NatureCold alkali extract of mycelium
Carrier NameN/A
Conjugate MethodN/A
AntibodiesMab 1
Antibody Type ClassIgM
Assay SystemIndirect Enzyme Immunoassay, immunofluorescence, Preciptin assay
Cross ReactivityThis antibody was cross-reactive with C.albicans
Proposed EpitopeOligogalactoside side chain
IEDB EpitopeN/A
Proposed UtilityThis antibody can be used to detect circulating antigen in the serum of patients with invasive aspergillosis by ELISA inhibition.
Curator IDAA + AS
Date of Curation13-01-2010
ReferencesPMC258783

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PolysacDB ID1129
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 701   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureFormalinized A. flavus EV 701 spores
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-1
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation08-02-2010
ReferencesPMC257149

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PolysacDB ID1130
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 601   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureA mycelial extract of A. fumigatus EV 601
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-2
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityEB-A2 has been used to detect circulating antigen in the serum of patients with invasive aspergillosis by ELISA inhibition
Curator IDAA + AS
Date of Curation09-02-2010
ReferencesPMC257149

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PolysacDB ID1131
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 601   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureA mycelial extract of A. fumigatus EV 601
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-3
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation09-02-2010
ReferencesPMC257149

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PolysacDB ID1132
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 601   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureFormalinized spores of A. fumigatus EV 601
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-4
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation10-02-2010
ReferencesPMC257149

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PolysacDB ID1133
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 601   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureA mycelial extract of A. fumigatus EV 601
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-5
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation10-02-2010
ReferencesPMC257149

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PolysacDB ID1134
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 701   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureA mycelial extract of A. flavus EV 701
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-6
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation11-02-2010
ReferencesPMC257149

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PolysacDB ID1135
Carbohydrate NameGalactomannan   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameAspergillus flavus EV 701   (NCBI Taxonomy)   (Drugpedia)
Basic StructureGalactomannans are composed of an α-1,6-linked mannan backbone substituted with mannopyranose oligosaccharides and immunodominant terminal galactofuranose present either singly or linked to oligogalactosides
BCSDB StructureN/A
Proposed FunctionThe wide distribution and similar chemical structure of the galactomannans have been responsible for serologic cross-reactions
Antigenic NatureA mycelial extract of A. flavus EV 701
Carrier NameNil
Conjugate MethodNil
AntibodiesMab EBA-7
Antibody Type ClassIgM
Assay SystemELISA, Immunofluorescence and immunoblotting
Cross ReactivityThis Mab cross-reacted with the five Aspergillus species (A. fumigatus ATCC 1028, A. flavus ATCC 10124, A. niger ATCC 10549, A. versicolor ATCC 16845, and A. terreus CBS 106.25) but not with other medically important fungi, such as Sporothrix schenckii ATCC 14096 and Candida spp. (25 strains, including 10 ATCC strains, 2 CBS strains, and 13 clinical isolates, representing seven species, i.e., C. albicans, C. tropicalis, C. [Torulopsis] glabrata, C. pseudotropicalis, C. parapsilosis, C. guilliennondii, and C. krusei). They also failed to react with the 15 different bacterial species tested
Proposed EpitopeAn epitope located on the β(1-->5) galactofuranose containing side chains of the galactomannan molecule
IEDB EpitopeN/A
Proposed UtilityThis rat Mab can be used against A. fumigatus galactomannan, already applied to the serological and immunohistological diagnosis of invasive aspergillosis
Curator IDAA + AS
Date of Curation12-02-2010
ReferencesPMC257149

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036