PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
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PolysacDB ID2070
Carbohydrate NameInner core oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
Microbe NamePseudomonas aeruginosa   (NCBI Taxonomy)   (Drugpedia)
Basic StructureThe LPS consists of three regions, namely O-polysaccharide, core oligosaccharide and lipid A. The core region of LPS is divided into the outer core and inner core. The inner core region consists of 2-keto-3-deoxyoctonic acid (KDO), heptose, phosphate, and probably ethanolamine. The outer core region commonly contains D-glucose, L-rhamnose, D-galactosamine, and L-alanine. The O-antigens consist of a trisaccharide repeating unit which consists of two uronic acid derivatives and one N-acetyl fucosamine residue
BCSDB StructureN/A
Proposed FunctionN/A
Antigenic NatureCore-LPS coated Whole cells
Carrier NameNil
Conjugate MethodNil
AntibodiesMab 7-4
Antibody Type ClassN/A
Assay SystemELISA and immunoblotting
Cross Reactivity"This Mab cross-reacted with all 20 P. aeruginosa serotypes as well as with other Pseudomonas species namely, P. acidovorans, P. chlororaphis, P. syringae, P.putida, P. aureofaciens, and P. stutzeri. MAb 7-4 did not react with other non-Pseudomonas gram negative organisms"
Proposed EpitopeN/A
IEDB EpitopeN/A
Proposed UtilityN/A
Curator IDAA + AS
Date of Curation07-01-2011
ReferencesPMC197099

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036