PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613

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Record - 1 of 20 [TOP]

PolysacDB ID	1950
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB1
Antibody Type Class	IgG3
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	04-12-2010
References	2483373

Record - 2 of 20 [TOP]

PolysacDB ID	1951
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB2
Antibody Type Class	IgG3
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	04-12-2010
References	2483373

Record - 3 of 20 [TOP]

PolysacDB ID	1952
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB3
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	04-12-2010
References	2483373

Record - 4 of 20 [TOP]

PolysacDB ID	1953
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB4
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains. This Mab cross-reacts with glycosidic epitopes on horse radish peroxidase protein
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	04-12-2010
References	2483373

Record - 5 of 20 [TOP]

PolysacDB ID	1954
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB5
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	05-12-2010
References	2483373

Record - 6 of 20 [TOP]

PolysacDB ID	1955
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB6
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	05-12-2010
References	2483373

Record - 7 of 20 [TOP]

PolysacDB ID	1956
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB7
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	05-12-2010
References	2483373

Record - 8 of 20 [TOP]

PolysacDB ID	1957
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB8
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	05-12-2010
References	2483373

Record - 9 of 20 [TOP]

PolysacDB ID	1958
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB9
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	05-12-2010
References	2483373

Record - 10 of 20 [TOP]

PolysacDB ID	1959
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB10
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	06-12-2010
References	2483373

Record - 11 of 20 [TOP]

PolysacDB ID	1960
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB11
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	06-12-2010
References	2483373

Record - 12 of 20 [TOP]

PolysacDB ID	1961
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB12
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	06-12-2010
References	2483373

Record - 13 of 20 [TOP]

PolysacDB ID	1962
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB13
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains. This Mab cross-reacts with glycosidic epitopes on horse radish peroxidase protein
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	06-12-2010
References	2483373

Record - 14 of 20 [TOP]

PolysacDB ID	1963
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB14
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains. This Mab cross-reacts with glycosidic epitopes on horse radish peroxidase protein
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	07-12-2010
References	2483373

Record - 15 of 20 [TOP]

PolysacDB ID	1964
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB15
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	07-12-2010
References	2483373

Record - 16 of 20 [TOP]

PolysacDB ID	1965
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB16
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	07-12-2010
References	2483373

Record - 17 of 20 [TOP]

PolysacDB ID	1966
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB17
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	07-12-2010
References	2483373

Record - 18 of 20 [TOP]

PolysacDB ID	1967
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB18
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	08-12-2010
References	2483373

Record - 19 of 20 [TOP]

PolysacDB ID	1968
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB19
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	08-12-2010
References	2483373

Record - 20 of 20 [TOP]

PolysacDB ID	1969
Carbohydrate Name	N-linked mannose oligosaccharides (Drugpedia)
Carbohydrate Class	Capsular polysaccharide
Microbe Name	Dictyostelium discoideum (NCBI Taxonomy) (Drugpedia)
Basic Structure	N/A
BCSDB Structure	N/A
Proposed Function	N/A
Antigenic Nature	Whole cell ghosts
Carrier Name	Nil
Conjugate Method	Nil
Antibodies	Mab CAB20
Antibody Type Class	N/A
Assay System	ELISA, dot blot, immunoblotting
Cross Reactivity	This Mab does not cross-react with glycoproteins containing α-fucoses in other linkages commonly seen in N- or O-linked sugar chains
Proposed Epitope	This Mab recognizes fucose residues in α1,6-linkage to the asparagine-bound GlcNAc of N-linked oligosaccharides
IEDB Epitope	N/A
Proposed Utility	N/A
Curator ID	AA + AS
Date of Curation	08-12-2010
References	2483373

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036