PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
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PolysacDB ID2212
Carbohydrate NameO-polysaccharide 9   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
Microbe NameSalmonella typhi   (NCBI Taxonomy)   (Drugpedia)
Basic StructureLPS O-antigens are formed by the polymerization of a tetrasaccharide repeating unit which is composed of [tyvelose-α[1-->3]-D-mannose-α[1-->3]-L-rhamnose-α[1-->3]-Dα[1-->2]
BCSDB StructureN/A
Proposed FunctionIt is an important virulence factor. It modulates the host immune defense mechanisms by interference with the normal serum bactericidal activity and/or the process of phagocytosis
Antigenic NatureHeat killed bacteria and purified Vi polysaccharide
Carrier NameNil
Conjugate MethodNil
AntibodiesMab MATy-O9
Antibody Type ClassIgG3
Assay SystemN/A
Cross ReactivityThis Mab cross-reacted with O9 containing dodecasaccharide glycoconjugate which was derived from S. enteritidis SH1262
Proposed EpitopeThe dideoxyhexosyl tyvelose residue is the immunodominant epitope
IEDB EpitopeN/A
Proposed UtilityThis Mab was shown to be a useful serotyping agent by correct identification in slide agglutination tests of 32 clinical isolates of all the S. typhi and other serogroup D salmonellae among a total of 140 bacterial isolates representing eight different Enterobacteriaceae genera tested
Curator IDAA + AS
Date of Curation05-03-2011
References1426999

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036