PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
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PolysacDB ID2412
Carbohydrate NamePhosphorylcholine (PC)   (Drugpedia)
Carbohydrate ClassCapsular polysaccharide
Microbe NameStreptococcus pneumoniae   (NCBI Taxonomy)   (Drugpedia)
Basic StructureN/A
BCSDB StructureN/A
Proposed FunctionAntibodies directed against phosphorylcholine (PC), a major epitope on the cell wall polysaccharide, protect against pneumococcal infections in mice; the role of anti-PC antibodies in humans, however, remains controversial
Antigenic NatureASRNKANDYTTEYSASVKGRFIVS [peptide1]
Carrier NameBovine serum albumin
Conjugate MethodBSA (5 mg) was dissolved in a 0.1 M sodium citrate solution (pH 5.5; 500 ml) to provide a BSA:peptide ratio of 1:25. Glutaraldehyde (0.1%) was added, and the solution was incubated for 1 h at room temperature. The reaction mixture was dialyzed against phosphate-buffered saline (PBS) for 5 days at 4°C
AntibodiesAntisera
Antibody Type ClassN/A
Assay SystemELISA, Opsonization and protection assays
Cross ReactivityN/A
Proposed EpitopeN/A
IEDB EpitopeN/A
Proposed UtilityThis peptide was able to inhibit the binding of anti-PC monoclonal antibodies to PC-BSA
Curator IDAA + AS
Date of Curation03-05-2011
References10992485

Bioinformatics Centre, Institute of Microbial Technology, Sec - 39A, Chandigarh, India - 160036