SAPdb: Entry Card with Detailed Information of Peptide

Welcome to Entry Card of Peptide


Details of SAPdb ID 1186
Primary information
SAPdb_ID1186
PMID24468750
Year2014
NameTriphenylalanine
SequenceFFF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-terminal ModicationNone
Length3
Peptide/Conjugate/MixturePeptide
Conjugate PartnerNone
TechniqueInsilico method: MARTINI coarse - grained molecular dynamic
SolventWater
MethodSimulation of a system consisting of 1800 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 80 mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. Ten 900 ns MD runs have been performed using different initial velocities starting from a state in which the peptides were placed randomly in the water box.
Concentration80 mg/ml
pHNA
Temperature
37°C
Incubation Period6000 ns
Self-Assembly FormationYes
Type of Self-AssemblyNanorods and Nanosphere
Size of Self-Assembled structureNA
Linear/CyclicLinear
Stability of NanostructureNA
CommentNA
Secondary information
Physico-Chemical properties
Physico-Chemical properties
STRUCTURE
Predicted Structure
SMILESN[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O