BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bhrf1-2-5p*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p 16 6.9
rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus miR-rL1-... 16 6.9
ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p 16 6.9
bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p 14 27
bma-miR-5860 MIMAT0026359 Brugia malayi miR-5860 14 27
bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a 14 27
dme-miR-4983-3p MIMAT0020218 Drosophila melanogaster miR-4983-3p 14 27
bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p 14 27
hsa-miR-4778-5p MIMAT0019936 Homo sapiens miR-4778-5p 14 27
cin-miR-96-3p MIMAT0016404 Ciona intestinalis miR-96-3p 14 27
bmo-miR-3261 MIMAT0015445 Bombyx mori miR-3261 14 27
gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p 14 27
ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447 14 27
>mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaattctg 8
||||||||
Sbjct: 1 aaattctg 8
>rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus
miR-rL1-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaattctg 8
||||||||
Sbjct: 1 aaattctg 8
>ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaattctg 8
||||||||
Sbjct: 1 aaattctg 8
>bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aattctg 8
|||||||
Sbjct: 7 aattctg 1
>bma-miR-5860 MIMAT0026359 Brugia malayi miR-5860
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaattct 7
|||||||
Sbjct: 7 aaattct 1
>bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaattct 7
|||||||
Sbjct: 8 aaattct 2
>dme-miR-4983-3p MIMAT0020218 Drosophila melanogaster
miR-4983-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattct 7
|||||||
Sbjct: 2 aaattct 8
>bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aattctg 8
|||||||
Sbjct: 7 aattctg 1
>hsa-miR-4778-5p MIMAT0019936 Homo sapiens miR-4778-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aattctg 8
|||||||
Sbjct: 1 aattctg 7
>cin-miR-96-3p MIMAT0016404 Ciona intestinalis miR-96-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aattctg 8
|||||||
Sbjct: 1 aattctg 7
>bmo-miR-3261 MIMAT0015445 Bombyx mori miR-3261
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaattct 7
|||||||
Sbjct: 8 aaattct 2
>gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaattct 7
|||||||
Sbjct: 7 aaattct 1
>ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aattctg 8
|||||||
Sbjct: 7 aattctg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 167
Number of extensions: 151
Number of successful extensions: 97
Number of sequences better than 100.0: 13
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
