BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-12*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dsi-miR-992-5p MIMAT0012491 Drosophila simulans miR-992-5p 16 6.9
gma-miR1511 MIMAT0007369 Glycine max miR1511 16 6.9
kshv-miR-K12-12-5p MIMAT0003712 Kaposi sarcoma-associated miR-K1... 16 6.9
eca-miR-7035 MIMAT0034654 Equus caballus miR-7035 14 27
eca-miR-8949 MIMAT0034478 Equus caballus miR-8949 14 27
str-miR-7880f-5p MIMAT0033321 Strongyloides ratti miR-7880f-5p 14 27
cbn-miR-7597 MIMAT0029653 Caenorhabditis brenneri miR-7597 14 27
crm-miR-7597 MIMAT0029612 Caenorhabditis remanei miR-7597 14 27
cbr-miR-7581 MIMAT0029582 Caenorhabditis briggsae miR-7581 14 27
mml-miR-1911-3p MIMAT0028375 Macaca mulatta miR-1911-3p 14 27
asu-miR-133-5p MIMAT0021497 Ascaris suum miR-133-5p 14 27
hsa-miR-4645-5p MIMAT0019705 Homo sapiens miR-4645-5p 14 27
api-miR-3045b MIMAT0014796 Acyrthosiphon pisum miR-3045b 14 27
hsa-miR-1911-3p MIMAT0007886 Homo sapiens miR-1911-3p 14 27
>dsi-miR-992-5p MIMAT0012491 Drosophila simulans miR-992-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aaccaggc 8
||||||||
Sbjct: 8 aaccaggc 1
>gma-miR1511 MIMAT0007369 Glycine max miR1511
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaccaggc 8
||||||||
Sbjct: 1 aaccaggc 8
>kshv-miR-K12-12-5p MIMAT0003712 Kaposi sarcoma-associated
miR-K12-12-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaccaggc 8
||||||||
Sbjct: 1 aaccaggc 8
>eca-miR-7035 MIMAT0034654 Equus caballus miR-7035
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaccagg 7
|||||||
Sbjct: 8 aaccagg 2
>eca-miR-8949 MIMAT0034478 Equus caballus miR-8949
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccagg 7
|||||||
Sbjct: 2 aaccagg 8
>str-miR-7880f-5p MIMAT0033321 Strongyloides ratti miR-7880f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 accaggc 8
|||||||
Sbjct: 8 accaggc 2
>cbn-miR-7597 MIMAT0029653 Caenorhabditis brenneri miR-7597
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccagg 7
|||||||
Sbjct: 2 aaccagg 8
>crm-miR-7597 MIMAT0029612 Caenorhabditis remanei miR-7597
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccagg 7
|||||||
Sbjct: 2 aaccagg 8
>cbr-miR-7581 MIMAT0029582 Caenorhabditis briggsae miR-7581
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccagg 7
|||||||
Sbjct: 2 aaccagg 8
>mml-miR-1911-3p MIMAT0028375 Macaca mulatta miR-1911-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 accaggc 8
|||||||
Sbjct: 1 accaggc 7
>asu-miR-133-5p MIMAT0021497 Ascaris suum miR-133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaccagg 7
|||||||
Sbjct: 7 aaccagg 1
>hsa-miR-4645-5p MIMAT0019705 Homo sapiens miR-4645-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 accaggc 8
|||||||
Sbjct: 1 accaggc 7
>api-miR-3045b MIMAT0014796 Acyrthosiphon pisum miR-3045b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 accaggc 8
|||||||
Sbjct: 7 accaggc 1
>hsa-miR-1911-3p MIMAT0007886 Homo sapiens miR-1911-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 accaggc 8
|||||||
Sbjct: 2 accaggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 280
Number of extensions: 263
Number of successful extensions: 226
Number of sequences better than 100.0: 14
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
