BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s67
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-410-3p MIMAT0036212 Capra hircus miR-410-3p 14 27
tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p 14 27
mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica miR-7374a-3p 14 27
mdo-miR-7333-5p MIMAT0028674 Monodelphis domestica miR-7333-5p 14 27
ggo-miR-410 MIMAT0024121 Gorilla gorilla miR-410 14 27
cgr-miR-410-3p MIMAT0023953 Cricetulus griseus miR-410-3p 14 27
oar-miR-410-3p MIMAT0019334 Ovis aries miR-410-3p 14 27
cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p 14 27
ppy-miR-410 MIMAT0015877 Pongo pygmaeus miR-410 14 27
aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p 14 27
eca-miR-410 MIMAT0013153 Equus caballus miR-410 14 27
sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p 14 27
ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p 14 27
bta-miR-410 MIMAT0009311 Bos taurus miR-410 14 27
ptr-miR-410 MIMAT0008137 Pan troglodytes miR-410 14 27
cfa-miR-410 MIMAT0006728 Canis familiaris miR-410 14 27
mml-miR-410-3p MIMAT0006316 Macaca mulatta miR-410-3p 14 27
rno-miR-410-3p MIMAT0005311 Rattus norvegicus miR-410-3p 14 27
hsa-miR-410-3p MIMAT0002171 Homo sapiens miR-410-3p 14 27
mmu-miR-410-3p MIMAT0001091 Mus musculus miR-410-3p 14 27
>chi-miR-410-3p MIMAT0036212 Capra hircus miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 2 aatataa 8
>mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica
miR-7374a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 2 aatataa 8
>mdo-miR-7333-5p MIMAT0028674 Monodelphis domestica miR-7333-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatataa 7
|||||||
Sbjct: 8 aatataa 2
>ggo-miR-410 MIMAT0024121 Gorilla gorilla miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>cgr-miR-410-3p MIMAT0023953 Cricetulus griseus miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>oar-miR-410-3p MIMAT0019334 Ovis aries miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 2 aatataa 8
>ppy-miR-410 MIMAT0015877 Pongo pygmaeus miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atataaa 8
|||||||
Sbjct: 8 atataaa 2
>eca-miR-410 MIMAT0013153 Equus caballus miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatataa 7
|||||||
Sbjct: 7 aatataa 1
>ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atataaa 8
|||||||
Sbjct: 8 atataaa 2
>bta-miR-410 MIMAT0009311 Bos taurus miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>ptr-miR-410 MIMAT0008137 Pan troglodytes miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>cfa-miR-410 MIMAT0006728 Canis familiaris miR-410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>mml-miR-410-3p MIMAT0006316 Macaca mulatta miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>rno-miR-410-3p MIMAT0005311 Rattus norvegicus miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>hsa-miR-410-3p MIMAT0002171 Homo sapiens miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
>mmu-miR-410-3p MIMAT0001091 Mus musculus miR-410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatataa 7
|||||||
Sbjct: 1 aatataa 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 99
Number of successful extensions: 69
Number of sequences better than 100.0: 20
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)