BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR51
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dvi-miR-975-3p MIMAT0035648 Drosophila virilis miR-975-3p              14      27
atr-miR8567 MIMAT0033843 Amborella trichopoda miR8567                  14      27
bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p         14      27
ppe-miR6271 MIMAT0027296 Prunus persica miR6271                        14      27
cca-miR6110-5p MIMAT0024547 Cynara cardunculus miR6110-5p              14      27
dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster miR-4940-3p       14      27
aly-miR4226 MIMAT0017914 Arabidopsis lyrata miR4226                    14      27
cin-miR-4003b-3p MIMAT0016470 Ciona intestinalis miR-4003b-3p          14      27
aly-miR172e-3p MIMAT0017530 Arabidopsis lyrata miR172e-3p              14      27
bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p                   14      27
mml-miR-624 MIMAT0006470 Macaca mulatta miR-624                        14      27
>dvi-miR-975-3p MIMAT0035648 Drosophila virilis miR-975-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 7 atcttgt 1
>atr-miR8567 MIMAT0033843 Amborella trichopoda miR8567
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 7 atcttgt 1
>bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatcttg 7
         |||||||
Sbjct: 1 aatcttg 7
>ppe-miR6271 MIMAT0027296 Prunus persica miR6271
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatcttg 7
         |||||||
Sbjct: 8 aatcttg 2
>cca-miR6110-5p MIMAT0024547 Cynara cardunculus miR6110-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 1 atcttgt 7
>dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster
         miR-4940-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 8 atcttgt 2
>aly-miR4226 MIMAT0017914 Arabidopsis lyrata miR4226
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 8 atcttgt 2
>cin-miR-4003b-3p MIMAT0016470 Ciona intestinalis miR-4003b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatcttg 7
         |||||||
Sbjct: 7 aatcttg 1
>aly-miR172e-3p MIMAT0017530 Arabidopsis lyrata miR172e-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatcttg 7
         |||||||
Sbjct: 2 aatcttg 8
>bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatcttg 7
         |||||||
Sbjct: 8 aatcttg 2
>mml-miR-624 MIMAT0006470 Macaca mulatta miR-624
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atcttgt 8
         |||||||
Sbjct: 8 atcttgt 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 271
Number of extensions: 260
Number of successful extensions: 232
Number of sequences better than 100.0: 11
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)