BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR51
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-975-3p MIMAT0035648 Drosophila virilis miR-975-3p 14 27
atr-miR8567 MIMAT0033843 Amborella trichopoda miR8567 14 27
bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p 14 27
ppe-miR6271 MIMAT0027296 Prunus persica miR6271 14 27
cca-miR6110-5p MIMAT0024547 Cynara cardunculus miR6110-5p 14 27
dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster miR-4940-3p 14 27
aly-miR4226 MIMAT0017914 Arabidopsis lyrata miR4226 14 27
cin-miR-4003b-3p MIMAT0016470 Ciona intestinalis miR-4003b-3p 14 27
aly-miR172e-3p MIMAT0017530 Arabidopsis lyrata miR172e-3p 14 27
bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p 14 27
mml-miR-624 MIMAT0006470 Macaca mulatta miR-624 14 27
>dvi-miR-975-3p MIMAT0035648 Drosophila virilis miR-975-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcttgt 8
|||||||
Sbjct: 7 atcttgt 1
>atr-miR8567 MIMAT0033843 Amborella trichopoda miR8567
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcttgt 8
|||||||
Sbjct: 7 atcttgt 1
>bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatcttg 7
|||||||
Sbjct: 1 aatcttg 7
>ppe-miR6271 MIMAT0027296 Prunus persica miR6271
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcttg 7
|||||||
Sbjct: 8 aatcttg 2
>cca-miR6110-5p MIMAT0024547 Cynara cardunculus miR6110-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcttgt 8
|||||||
Sbjct: 1 atcttgt 7
>dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster
miR-4940-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcttgt 8
|||||||
Sbjct: 8 atcttgt 2
>aly-miR4226 MIMAT0017914 Arabidopsis lyrata miR4226
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcttgt 8
|||||||
Sbjct: 8 atcttgt 2
>cin-miR-4003b-3p MIMAT0016470 Ciona intestinalis miR-4003b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcttg 7
|||||||
Sbjct: 7 aatcttg 1
>aly-miR172e-3p MIMAT0017530 Arabidopsis lyrata miR172e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatcttg 7
|||||||
Sbjct: 2 aatcttg 8
>bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcttg 7
|||||||
Sbjct: 8 aatcttg 2
>mml-miR-624 MIMAT0006470 Macaca mulatta miR-624
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcttgt 8
|||||||
Sbjct: 8 atcttgt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 271
Number of extensions: 260
Number of successful extensions: 232
Number of sequences better than 100.0: 11
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)