BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i1*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3861-5p MIMAT0018796 Tribolium castaneum miR-3861-5p 16 6.9
aly-miR4223 MIMAT0017911 Arabidopsis lyrata miR4223 16 6.9
iltv-miR-I1-3p MIMAT0012724 Infectious laryngotracheitis miR-I1-3p 16 6.9
gma-miR9767 MIMAT0036404 Glycine max miR9767 14 27
efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a 14 27
str-miR-8382-5p MIMAT0033420 Strongyloides ratti miR-8382-5p 14 27
stu-miR8002-3p MIMAT0031190 Solanum tuberosum miR8002-3p 14 27
mdo-miR-1540b-5p MIMAT0028938 Monodelphis domestica miR-1540b-5p 14 27
mmu-miR-7216-3p MIMAT0028401 Mus musculus miR-7216-3p 14 27
cca-miR6118-5p MIMAT0024565 Cynara cardunculus miR6118-5p 14 27
mtr-miR5556-5p MIMAT0022211 Medicago truncatula miR5556-5p 14 27
osa-miR5532 MIMAT0022167 Oryza sativa miR5532 14 27
pma-miR-4571-5p MIMAT0019603 Petromyzon marinus miR-4571-5p 14 27
ame-miR-3757 MIMAT0018529 Apis mellifera miR-3757 14 27
cin-miR-4170-5p MIMAT0016778 Ciona intestinalis miR-4170-5p 14 27
cin-miR-4145-3p MIMAT0016748 Ciona intestinalis miR-4145-3p 14 27
aly-miR856-5p MIMAT0017641 Arabidopsis lyrata miR856-5p 14 27
mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p 14 27
aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica miR-2021-5p 14 27
>tca-miR-3861-5p MIMAT0018796 Tribolium castaneum miR-3861-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aattccat 8
||||||||
Sbjct: 8 aattccat 1
>aly-miR4223 MIMAT0017911 Arabidopsis lyrata miR4223
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aattccat 8
||||||||
Sbjct: 8 aattccat 1
>iltv-miR-I1-3p MIMAT0012724 Infectious laryngotracheitis
miR-I1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aattccat 8
||||||||
Sbjct: 1 aattccat 8
>gma-miR9767 MIMAT0036404 Glycine max miR9767
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attccat 8
|||||||
Sbjct: 7 attccat 1
>efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attccat 8
|||||||
Sbjct: 1 attccat 7
>str-miR-8382-5p MIMAT0033420 Strongyloides ratti miR-8382-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>stu-miR8002-3p MIMAT0031190 Solanum tuberosum miR8002-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attccat 8
|||||||
Sbjct: 1 attccat 7
>mdo-miR-1540b-5p MIMAT0028938 Monodelphis domestica
miR-1540b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attccat 8
|||||||
Sbjct: 2 attccat 8
>mmu-miR-7216-3p MIMAT0028401 Mus musculus miR-7216-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>cca-miR6118-5p MIMAT0024565 Cynara cardunculus miR6118-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>mtr-miR5556-5p MIMAT0022211 Medicago truncatula miR5556-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>osa-miR5532 MIMAT0022167 Oryza sativa miR5532
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attccat 8
|||||||
Sbjct: 7 attccat 1
>pma-miR-4571-5p MIMAT0019603 Petromyzon marinus miR-4571-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attccat 8
|||||||
Sbjct: 7 attccat 1
>ame-miR-3757 MIMAT0018529 Apis mellifera miR-3757
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>cin-miR-4170-5p MIMAT0016778 Ciona intestinalis miR-4170-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattcca 7
|||||||
Sbjct: 7 aattcca 1
>cin-miR-4145-3p MIMAT0016748 Ciona intestinalis miR-4145-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attccat 8
|||||||
Sbjct: 8 attccat 2
>aly-miR856-5p MIMAT0017641 Arabidopsis lyrata miR856-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattcca 7
|||||||
Sbjct: 2 aattcca 8
>mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attccat 8
|||||||
Sbjct: 1 attccat 7
>aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica
miR-2021-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attccat 8
|||||||
Sbjct: 8 attccat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 305
Number of extensions: 283
Number of successful extensions: 243
Number of sequences better than 100.0: 19
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
