BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bhrf1-2-5p*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p 14 20
mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p 14 20
bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p 14 20
hsa-miR-4778-5p MIMAT0019936 Homo sapiens miR-4778-5p 14 20
cin-miR-96-3p MIMAT0016404 Ciona intestinalis miR-96-3p 14 20
ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447 14 20
rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus miR-rL1-... 14 20
ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p 14 20
ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p 12 80
ssc-miR-9786-3p MIMAT0037003 Sus scrofa miR-9786-3p 12 80
gma-miR9745 MIMAT0036365 Glycine max miR9745 12 80
atr-miR8562c MIMAT0033838 Amborella trichopoda miR8562c 12 80
sma-miR-8464-5p MIMAT0033647 Schistosoma mansoni miR-8464-5p 12 80
ppc-miR-84f-3p MIMAT0033287 Pristionchus pacificus miR-84f-3p 12 80
ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p 12 80
ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p 12 80
cpa-miR8134 MIMAT0031825 Carica papaya miR8134 12 80
stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p 12 80
mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p 12 80
mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p 12 80
ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a 12 80
bma-miR-5860 MIMAT0026359 Brugia malayi miR-5860 12 80
gga-miR-3524b-3p MIMAT0025753 Gallus gallus miR-3524b-3p 12 80
gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p 12 80
hco-miR-5900 MIMAT0023346 Haemonchus contortus miR-5900 12 80
osa-miR2275c MIMAT0022147 Oryza sativa miR2275c 12 80
osa-miR5497 MIMAT0022130 Oryza sativa miR5497 12 80
gma-miR5038b MIMAT0021612 Glycine max miR5038b 12 80
gma-miR5038a MIMAT0021063 Glycine max miR5038a 12 80
dme-miR-4984-3p MIMAT0020220 Drosophila melanogaster miR-4984-3p 12 80
dme-miR-4983-3p MIMAT0020218 Drosophila melanogaster miR-4983-3p 12 80
spu-miR-4852 MIMAT0020075 Strongylocentrotus purpuratus miR-4852 12 80
hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p 12 80
oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p 12 80
cin-miR-4082-3p MIMAT0016654 Ciona intestinalis miR-4082-3p 12 80
cin-miR-4003a-3p MIMAT0016462 Ciona intestinalis miR-4003a-3p 12 80
gga-miR-3524a MIMAT0016374 Gallus gallus miR-3524a 12 80
ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544 12 80
api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a 12 80
api-miR-3044 MIMAT0014782 Acyrthosiphon pisum miR-3044 12 80
eca-miR-544 MIMAT0013170 Equus caballus miR-544 12 80
eca-miR-544b MIMAT0013118 Equus caballus miR-544b 12 80
rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p 12 80
dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura miR-2545a-5p 12 80
bta-miR-2315 MIMAT0011835 Bos taurus miR-2315 12 80
crm-miR-239a-3p MIMAT0011617 Caenorhabditis remanei miR-239a-3p 12 80
cfa-miR-544 MIMAT0009910 Canis familiaris miR-544 12 80
bta-miR-544a MIMAT0009346 Bos taurus miR-544a 12 80
bta-miR-544b MIMAT0009345 Bos taurus miR-544b 12 80
bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p 12 80
tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p 12 80
ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544 12 80
ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p 12 80
cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p 12 80
mml-miR-544 MIMAT0006408 Macaca mulatta miR-544 12 80
mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p 12 80
gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794 12 80
gga-miR-1619 MIMAT0007486 Gallus gallus miR-1619 12 80
gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p 12 80
oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p 12 80
ppt-miR1023b-3p MIMAT0005105 Physcomitrella patens miR1023b-3p 12 80
ppt-miR1023a-3p MIMAT0005103 Physcomitrella patens miR1023a-3p 12 80
mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p 12 80
mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica miR-219-1-3p 12 80
hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a 12 80
rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p 12 80
mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p 12 80
hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p 12 80
>bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattctg 7
|||||||
Sbjct: 7 aattctg 1
>mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattctg 7
|||||||
Sbjct: 2 aattctg 8
>bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattctg 7
|||||||
Sbjct: 7 aattctg 1
>hsa-miR-4778-5p MIMAT0019936 Homo sapiens miR-4778-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattctg 7
|||||||
Sbjct: 1 aattctg 7
>cin-miR-96-3p MIMAT0016404 Ciona intestinalis miR-96-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattctg 7
|||||||
Sbjct: 1 aattctg 7
>ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattctg 7
|||||||
Sbjct: 7 aattctg 1
>rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus
miR-rL1-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattctg 7
|||||||
Sbjct: 2 aattctg 8
>ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattctg 7
|||||||
Sbjct: 2 aattctg 8
>ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>ssc-miR-9786-3p MIMAT0037003 Sus scrofa miR-9786-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 3 aattct 8
>gma-miR9745 MIMAT0036365 Glycine max miR9745
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>atr-miR8562c MIMAT0033838 Amborella trichopoda miR8562c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 7 attctg 2
>sma-miR-8464-5p MIMAT0033647 Schistosoma mansoni miR-8464-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>ppc-miR-84f-3p MIMAT0033287 Pristionchus pacificus miR-84f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>cpa-miR8134 MIMAT0031825 Carica papaya miR8134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 3 aattct 8
>mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>bma-miR-5860 MIMAT0026359 Brugia malayi miR-5860
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>gga-miR-3524b-3p MIMAT0025753 Gallus gallus miR-3524b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 8 attctg 3
>gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>hco-miR-5900 MIMAT0023346 Haemonchus contortus miR-5900
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 1 aattct 6
>osa-miR2275c MIMAT0022147 Oryza sativa miR2275c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>osa-miR5497 MIMAT0022130 Oryza sativa miR5497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 6 attctg 1
>gma-miR5038b MIMAT0021612 Glycine max miR5038b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>gma-miR5038a MIMAT0021063 Glycine max miR5038a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>dme-miR-4984-3p MIMAT0020220 Drosophila melanogaster
miR-4984-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 1 aattct 6
>dme-miR-4983-3p MIMAT0020218 Drosophila melanogaster
miR-4983-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 3 aattct 8
>spu-miR-4852 MIMAT0020075 Strongylocentrotus purpuratus
miR-4852
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 1 aattct 6
>hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>cin-miR-4082-3p MIMAT0016654 Ciona intestinalis miR-4082-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>cin-miR-4003a-3p MIMAT0016462 Ciona intestinalis miR-4003a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>gga-miR-3524a MIMAT0016374 Gallus gallus miR-3524a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 6 attctg 1
>ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 6 attctg 1
>api-miR-3044 MIMAT0014782 Acyrthosiphon pisum miR-3044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 3 aattct 8
>eca-miR-544 MIMAT0013170 Equus caballus miR-544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>eca-miR-544b MIMAT0013118 Equus caballus miR-544b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura
miR-2545a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattct 6
||||||
Sbjct: 1 aattct 6
>bta-miR-2315 MIMAT0011835 Bos taurus miR-2315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 8 attctg 3
>crm-miR-239a-3p MIMAT0011617 Caenorhabditis remanei miR-239a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 6 attctg 1
>cfa-miR-544 MIMAT0009910 Canis familiaris miR-544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>bta-miR-544a MIMAT0009346 Bos taurus miR-544a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>bta-miR-544b MIMAT0009345 Bos taurus miR-544b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 6 attctg 1
>ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>mml-miR-544 MIMAT0006408 Macaca mulatta miR-544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attctg 7
||||||
Sbjct: 8 attctg 3
>gga-miR-1619 MIMAT0007486 Gallus gallus miR-1619
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>ppt-miR1023b-3p MIMAT0005105 Physcomitrella patens miR1023b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>ppt-miR1023a-3p MIMAT0005103 Physcomitrella patens miR1023a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 8 aattct 3
>mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica
miR-219-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attctg 7
||||||
Sbjct: 1 attctg 6
>rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
>hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattct 6
||||||
Sbjct: 6 aattct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 86
Number of successful extensions: 69
Number of sequences better than 100.0: 68
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)