BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-13-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-363-3p MIMAT0036913 Ophiophagus hannah miR-363-3p 14 20
tch-miR-363-3p MIMAT0036586 Tupaia chinensis miR-363-3p 14 20
ocu-miR-367-3p MIMAT0036325 Oryctolagus cuniculus miR-367-3p 14 20
chi-miR-363-3p MIMAT0036176 Capra hircus miR-363-3p 14 20
pxy-miR-8500 MIMAT0033760 Plutella xylostella miR-8500 14 20
pxy-miR-8499a MIMAT0033709 Plutella xylostella miR-8499a 14 20
ppc-miR-8227-3p MIMAT0032899 Pristionchus pacificus miR-8227-3p 14 20
bbe-miR-2076-5p MIMAT0031642 Branchiostoma belcheri miR-2076-5p 14 20
ipu-miR-363 MIMAT0029506 Ictalurus punctatus miR-363 14 20
ccr-miR-363 MIMAT0026293 Cyprinus carpio miR-363 14 20
tgu-miR-367 MIMAT0025395 Taeniopygia guttata miR-367 14 20
mse-miR-92b MIMAT0024487 Manduca sexta miR-92b 14 20
ggo-miR-363 MIMAT0024157 Gorilla gorilla miR-363 14 20
aca-miR-367 MIMAT0021949 Anolis carolinensis miR-367 14 20
aca-miR-363-3p MIMAT0021946 Anolis carolinensis miR-363-3p 14 20
dme-miR-4982-5p MIMAT0020215 Drosophila melanogaster miR-4982-5p 14 20
sko-miR-4818g-3p MIMAT0020018 Saccoglossus kowalevskii miR-4818g-3p 14 20
sko-miR-4818c MIMAT0020012 Saccoglossus kowalevskii miR-4818c 14 20
ppy-miR-367 MIMAT0015854 Pongo pygmaeus miR-367 14 20
ppy-miR-363 MIMAT0015852 Pongo pygmaeus miR-363 14 20
ssc-miR-363 MIMAT0015711 Sus scrofa miR-363 14 20
bmo-miR-3259 MIMAT0015443 Bombyx mori miR-3259 14 20
tgu-miR-363-3p MIMAT0014501 Taeniopygia guttata miR-363-3p 14 20
aae-miR-92b-3p MIMAT0014322 Aedes aegypti miR-92b-3p 14 20
eca-miR-363 MIMAT0013212 Equus caballus miR-363 14 20
eca-miR-367 MIMAT0012918 Equus caballus miR-367 14 20
dpu-miR-92 MIMAT0012672 Daphnia pulex miR-92 14 20
ppc-miR-2255 MIMAT0011679 Pristionchus pacificus miR-2255 14 20
ame-miR-92b MIMAT0010117 Apis mellifera miR-92b 14 20
bfl-miR-2076-5p MIMAT0010005 Branchiostoma floridae miR-2076-5p 14 20
lgi-miR-92 MIMAT0009574 Lottia gigantea miR-92 14 20
cte-miR-92b MIMAT0009521 Capitella teleta miR-92b 14 20
bmo-miR-92b MIMAT0009155 Bombyx mori miR-92b 14 20
bta-miR-367 MIMAT0009299 Bos taurus miR-367 14 20
dya-miR-92b MIMAT0009120 Drosophila yakuba miR-92b 14 20
dwi-miR-92b MIMAT0008991 Drosophila willistoni miR-92b 14 20
dvi-miR-92b-3p MIMAT0008962 Drosophila virilis miR-92b-3p 14 20
dsi-miR-92b MIMAT0008879 Drosophila simulans miR-92b 14 20
dse-miR-92b MIMAT0008774 Drosophila sechellia miR-92b 14 20
dpe-miR-92b MIMAT0008756 Drosophila persimilis miR-92b 14 20
dmo-miR-92b MIMAT0008658 Drosophila mojavensis miR-92b 14 20
dgr-miR-92b MIMAT0008624 Drosophila grimshawi miR-92b 14 20
der-miR-92b MIMAT0008543 Drosophila erecta miR-92b 14 20
dan-miR-92b MIMAT0008405 Drosophila ananassae miR-92b 14 20
ptr-miR-367 MIMAT0008118 Pan troglodytes miR-367 14 20
cfa-miR-363 MIMAT0006750 Canis familiaris miR-363 14 20
mml-miR-367 MIMAT0006292 Macaca mulatta miR-367 14 20
mml-miR-363-3p MIMAT0006290 Macaca mulatta miR-363-3p 14 20
oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384 14 20
oan-miR-363-3p MIMAT0006860 Ornithorhynchus anatinus miR-363-3p 14 20
mdo-miR-367 MIMAT0004184 Monodelphis domestica miR-367 14 20
xtr-miR-363-3p MIMAT0003702 Xenopus tropicalis miR-363-3p 14 20
xtr-miR-367 MIMAT0003638 Xenopus tropicalis miR-367 14 20
gga-miR-367 MIMAT0003369 Gallus gallus miR-367 14 20
rno-miR-363-3p MIMAT0003210 Rattus norvegicus miR-363-3p 14 20
mmu-miR-367-3p MIMAT0003181 Mus musculus miR-367-3p 14 20
dre-miR-363-3p MIMAT0001874 Danio rerio miR-363-3p 14 20
aga-miR-92b MIMAT0001528 Anopheles gambiae miR-92b 14 20
dps-miR-92b MIMAT0001227 Drosophila pseudoobscura miR-92b 14 20
hsa-miR-367-3p MIMAT0000719 Homo sapiens miR-367-3p 14 20
mmu-miR-363-3p MIMAT0000708 Mus musculus miR-363-3p 14 20
hsa-miR-363-3p MIMAT0000707 Homo sapiens miR-363-3p 14 20
dme-miR-92b-3p MIMAT0000358 Drosophila melanogaster miR-92b-3p 14 20
dme-miR-9374-5p MIMAT0035211 Drosophila melanogaster miR-9374-5p 12 80
sma-miR-8422-5p MIMAT0033548 Schistosoma mansoni miR-8422-5p 12 80
ppc-miR-8334-5p MIMAT0033212 Pristionchus pacificus miR-8334-5p 12 80
ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p 12 80
prd-miR-7870-3p MIMAT0030485 Panagrellus redivivus miR-7870-3p 12 80
bta-miR-7858 MIMAT0030433 Bos taurus miR-7858 12 80
oar-miR-25 MIMAT0030050 Ovis aries miR-25 12 80
mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p 12 80
gga-miR-7469-5p MIMAT0029092 Gallus gallus miR-7469-5p 12 80
mmu-miR-6399 MIMAT0025151 Mus musculus miR-6399 12 80
ame-miR-6051 MIMAT0023675 Apis mellifera miR-6051 12 80
sha-miR-130b MIMAT0022814 Sarcophilus harrisii miR-130b 12 80
sbi-miR5564b MIMAT0022242 Sorghum bicolor miR5564b 12 80
asu-miR-5362-3p MIMAT0021587 Ascaris suum miR-5362-3p 12 80
sko-miR-4818a MIMAT0020009 Saccoglossus kowalevskii miR-4818a 12 80
hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p 12 80
nlo-miR-92a MIMAT0018439 Nasonia longicornis miR-92a 12 80
ngi-miR-92a MIMAT0018407 Nasonia giraulti miR-92a 12 80
cin-miR-4096-3p MIMAT0016677 Ciona intestinalis miR-4096-3p 12 80
cin-miR-4037-5p MIMAT0016563 Ciona intestinalis miR-4037-5p 12 80
sja-miR-310 MIMAT0016271 Schistosoma japonicum miR-310 12 80
nvi-miR-92a MIMAT0015668 Nasonia vitripennis miR-92a 12 80
bmo-miR-3402 MIMAT0015606 Bombyx mori miR-3402 12 80
bmo-miR-3227 MIMAT0015409 Bombyx mori miR-3227 12 80
cqu-miR-92 MIMAT0014399 Culex quinquefasciatus miR-92 12 80
osa-miR2876-5p MIMAT0020949 Oryza sativa miR2876-5p 12 80
cte-miR-92c MIMAT0009522 Capitella teleta miR-92c 12 80
tca-miR-92b-3p MIMAT0008368 Tribolium castaneum miR-92b-3p 12 80
tca-miR-92a-3p MIMAT0008367 Tribolium castaneum miR-92a-3p 12 80
gga-miR-1702 MIMAT0007594 Gallus gallus miR-1702 12 80
oan-miR-1421ab-2-3p MIMAT0007300 Ornithorhynchus anatinus miR-14... 12 80
oan-miR-1421ab-3p MIMAT0007252 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p 12 80
ppt-miR1071-5p MIMAT0005199 Physcomitrella patens miR1071-5p 12 80
dme-miR-978-5p MIMAT0020875 Drosophila melanogaster miR-978-5p 12 80
ame-miR-92a MIMAT0004435 Apis mellifera miR-92a 12 80
mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p 12 80
bta-miR-363 MIMAT0003855 Bos taurus miR-363 12 80
ppt-miR1215 MIMAT0003904 Physcomitrella patens miR1215 12 80
mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p 12 80
dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p 12 80
rno-miR-32-3p MIMAT0017103 Rattus norvegicus miR-32-3p 12 80
>oha-miR-363-3p MIMAT0036913 Ophiophagus hannah miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>tch-miR-363-3p MIMAT0036586 Tupaia chinensis miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ocu-miR-367-3p MIMAT0036325 Oryctolagus cuniculus miR-367-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>chi-miR-363-3p MIMAT0036176 Capra hircus miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>pxy-miR-8500 MIMAT0033760 Plutella xylostella miR-8500
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattgca 7
|||||||
Sbjct: 8 aattgca 2
>pxy-miR-8499a MIMAT0033709 Plutella xylostella miR-8499a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattgca 7
|||||||
Sbjct: 8 aattgca 2
>ppc-miR-8227-3p MIMAT0032899 Pristionchus pacificus miR-8227-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>bbe-miR-2076-5p MIMAT0031642 Branchiostoma belcheri miR-2076-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ipu-miR-363 MIMAT0029506 Ictalurus punctatus miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ccr-miR-363 MIMAT0026293 Cyprinus carpio miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>tgu-miR-367 MIMAT0025395 Taeniopygia guttata miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mse-miR-92b MIMAT0024487 Manduca sexta miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ggo-miR-363 MIMAT0024157 Gorilla gorilla miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>aca-miR-367 MIMAT0021949 Anolis carolinensis miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>aca-miR-363-3p MIMAT0021946 Anolis carolinensis miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dme-miR-4982-5p MIMAT0020215 Drosophila melanogaster
miR-4982-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattgca 7
|||||||
Sbjct: 8 aattgca 2
>sko-miR-4818g-3p MIMAT0020018 Saccoglossus kowalevskii
miR-4818g-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>sko-miR-4818c MIMAT0020012 Saccoglossus kowalevskii miR-4818c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ppy-miR-367 MIMAT0015854 Pongo pygmaeus miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ppy-miR-363 MIMAT0015852 Pongo pygmaeus miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ssc-miR-363 MIMAT0015711 Sus scrofa miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>bmo-miR-3259 MIMAT0015443 Bombyx mori miR-3259
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattgca 7
|||||||
Sbjct: 7 aattgca 1
>tgu-miR-363-3p MIMAT0014501 Taeniopygia guttata miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>aae-miR-92b-3p MIMAT0014322 Aedes aegypti miR-92b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>eca-miR-363 MIMAT0013212 Equus caballus miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>eca-miR-367 MIMAT0012918 Equus caballus miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dpu-miR-92 MIMAT0012672 Daphnia pulex miR-92
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ppc-miR-2255 MIMAT0011679 Pristionchus pacificus miR-2255
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ame-miR-92b MIMAT0010117 Apis mellifera miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>bfl-miR-2076-5p MIMAT0010005 Branchiostoma floridae miR-2076-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>lgi-miR-92 MIMAT0009574 Lottia gigantea miR-92
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>cte-miR-92b MIMAT0009521 Capitella teleta miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>bmo-miR-92b MIMAT0009155 Bombyx mori miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>bta-miR-367 MIMAT0009299 Bos taurus miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 2 aattgca 8
>dya-miR-92b MIMAT0009120 Drosophila yakuba miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dwi-miR-92b MIMAT0008991 Drosophila willistoni miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dvi-miR-92b-3p MIMAT0008962 Drosophila virilis miR-92b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dsi-miR-92b MIMAT0008879 Drosophila simulans miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dse-miR-92b MIMAT0008774 Drosophila sechellia miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dpe-miR-92b MIMAT0008756 Drosophila persimilis miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dmo-miR-92b MIMAT0008658 Drosophila mojavensis miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dgr-miR-92b MIMAT0008624 Drosophila grimshawi miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>der-miR-92b MIMAT0008543 Drosophila erecta miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dan-miR-92b MIMAT0008405 Drosophila ananassae miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>ptr-miR-367 MIMAT0008118 Pan troglodytes miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>cfa-miR-363 MIMAT0006750 Canis familiaris miR-363
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mml-miR-367 MIMAT0006292 Macaca mulatta miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mml-miR-363-3p MIMAT0006290 Macaca mulatta miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattgca 7
|||||||
Sbjct: 7 aattgca 1
>oan-miR-363-3p MIMAT0006860 Ornithorhynchus anatinus miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mdo-miR-367 MIMAT0004184 Monodelphis domestica miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 2 aattgca 8
>xtr-miR-363-3p MIMAT0003702 Xenopus tropicalis miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>xtr-miR-367 MIMAT0003638 Xenopus tropicalis miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>gga-miR-367 MIMAT0003369 Gallus gallus miR-367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>rno-miR-363-3p MIMAT0003210 Rattus norvegicus miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mmu-miR-367-3p MIMAT0003181 Mus musculus miR-367-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dre-miR-363-3p MIMAT0001874 Danio rerio miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>aga-miR-92b MIMAT0001528 Anopheles gambiae miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dps-miR-92b MIMAT0001227 Drosophila pseudoobscura miR-92b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>hsa-miR-367-3p MIMAT0000719 Homo sapiens miR-367-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>mmu-miR-363-3p MIMAT0000708 Mus musculus miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>hsa-miR-363-3p MIMAT0000707 Homo sapiens miR-363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dme-miR-92b-3p MIMAT0000358 Drosophila melanogaster miR-92b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattgca 7
|||||||
Sbjct: 1 aattgca 7
>dme-miR-9374-5p MIMAT0035211 Drosophila melanogaster
miR-9374-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>sma-miR-8422-5p MIMAT0033548 Schistosoma mansoni miR-8422-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 6 aattgc 1
>ppc-miR-8334-5p MIMAT0033212 Pristionchus pacificus miR-8334-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>prd-miR-7870-3p MIMAT0030485 Panagrellus redivivus miR-7870-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>bta-miR-7858 MIMAT0030433 Bos taurus miR-7858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 8 aattgc 3
>oar-miR-25 MIMAT0030050 Ovis aries miR-25
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattgc 6
||||||
Sbjct: 3 aattgc 8
>gga-miR-7469-5p MIMAT0029092 Gallus gallus miR-7469-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>mmu-miR-6399 MIMAT0025151 Mus musculus miR-6399
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 7 attgca 2
>ame-miR-6051 MIMAT0023675 Apis mellifera miR-6051
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattgc 6
||||||
Sbjct: 3 aattgc 8
>sha-miR-130b MIMAT0022814 Sarcophilus harrisii miR-130b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>sbi-miR5564b MIMAT0022242 Sorghum bicolor miR5564b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 6 aattgc 1
>asu-miR-5362-3p MIMAT0021587 Ascaris suum miR-5362-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>sko-miR-4818a MIMAT0020009 Saccoglossus kowalevskii miR-4818a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattgc 6
||||||
Sbjct: 3 aattgc 8
>nlo-miR-92a MIMAT0018439 Nasonia longicornis miR-92a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>ngi-miR-92a MIMAT0018407 Nasonia giraulti miR-92a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>cin-miR-4096-3p MIMAT0016677 Ciona intestinalis miR-4096-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 6 attgca 1
>cin-miR-4037-5p MIMAT0016563 Ciona intestinalis miR-4037-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattgc 6
||||||
Sbjct: 3 aattgc 8
>sja-miR-310 MIMAT0016271 Schistosoma japonicum miR-310
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 3 attgca 8
>nvi-miR-92a MIMAT0015668 Nasonia vitripennis miR-92a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>bmo-miR-3402 MIMAT0015606 Bombyx mori miR-3402
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 6 attgca 1
>bmo-miR-3227 MIMAT0015409 Bombyx mori miR-3227
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 8 aattgc 3
>cqu-miR-92 MIMAT0014399 Culex quinquefasciatus miR-92
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>osa-miR2876-5p MIMAT0020949 Oryza sativa miR2876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattgc 6
||||||
Sbjct: 1 aattgc 6
>cte-miR-92c MIMAT0009522 Capitella teleta miR-92c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>tca-miR-92b-3p MIMAT0008368 Tribolium castaneum miR-92b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>tca-miR-92a-3p MIMAT0008367 Tribolium castaneum miR-92a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>gga-miR-1702 MIMAT0007594 Gallus gallus miR-1702
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>oan-miR-1421ab-2-3p MIMAT0007300 Ornithorhynchus anatinus
miR-1421ab-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 6 attgca 1
>oan-miR-1421ab-3p MIMAT0007252 Ornithorhynchus anatinus
miR-1421ab-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 6 attgca 1
>oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>ppt-miR1071-5p MIMAT0005199 Physcomitrella patens miR1071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 8 aattgc 3
>dme-miR-978-5p MIMAT0020875 Drosophila melanogaster miR-978-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 6 attgca 1
>ame-miR-92a MIMAT0004435 Apis mellifera miR-92a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>bta-miR-363 MIMAT0003855 Bos taurus miR-363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 1 attgca 6
>ppt-miR1215 MIMAT0003904 Physcomitrella patens miR1215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attgca 7
||||||
Sbjct: 3 attgca 8
>mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attgca 7
||||||
Sbjct: 8 attgca 3
>rno-miR-32-3p MIMAT0017103 Rattus norvegicus miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattgc 6
||||||
Sbjct: 6 aattgc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 416
Number of extensions: 353
Number of successful extensions: 105
Number of sequences better than 100.0: 105
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 105
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
