BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart14*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7046-5p MIMAT0027996 Mus musculus miR-7046-5p 14 20
ebv-miR-BART14-5p MIMAT0003425 Epstein Barr miR-BART14-5p 14 20
ssc-miR-9797-3p MIMAT0037015 Sus scrofa miR-9797-3p 12 80
oha-miR-135-3-3p MIMAT0036707 Ophiophagus hannah miR-135-3-3p 12 80
oha-miR-135-2-3p MIMAT0036706 Ophiophagus hannah miR-135-2-3p 12 80
mmu-miR-9769-3p MIMAT0036462 Mus musculus miR-9769-3p 12 80
chi-miR-454-5p MIMAT0036239 Capra hircus miR-454-5p 12 80
chi-miR-135b-3p MIMAT0035954 Capra hircus miR-135b-3p 12 80
tae-miR9666a-3p MIMAT0035778 Triticum aestivum miR9666a-3p 12 80
efu-miR-135 MIMAT0034970 Eptesicus fuscus miR-135 12 80
cfa-miR-8855 MIMAT0034350 Canis familiaris miR-8855 12 80
ssa-miR-454-5p MIMAT0032641 Salmo salar miR-454-5p 12 80
ssa-miR-135c-3p MIMAT0032349 Salmo salar miR-135c-3p 12 80
bdi-miR7780-3p MIMAT0030315 Brachypodium distachyon miR7780-3p 12 80
mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p 12 80
mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p 12 80
hsa-miR-6841-5p MIMAT0027584 Homo sapiens miR-6841-5p 12 80
hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p 12 80
hsa-miR-6789-5p MIMAT0027478 Homo sapiens miR-6789-5p 12 80
hsa-miR-6755-5p MIMAT0027410 Homo sapiens miR-6755-5p 12 80
tgu-miR-1759 MIMAT0025405 Taeniopygia guttata miR-1759 12 80
rno-miR-6215 MIMAT0024854 Rattus norvegicus miR-6215 12 80
cgr-miR-652-5p MIMAT0023991 Cricetulus griseus miR-652-5p 12 80
hco-miR-5884 MIMAT0023316 Haemonchus contortus miR-5884 12 80
cin-miR-5596a-3p MIMAT0022316 Ciona intestinalis miR-5596a-3p 12 80
aca-miR-135-3-3p MIMAT0021753 Anolis carolinensis miR-135-3-3p 12 80
aca-miR-135-2-3p MIMAT0021752 Anolis carolinensis miR-135-2-3p 12 80
osa-miR5152-5p MIMAT0021101 Oryza sativa miR5152-5p 12 80
pma-miR-135a-3p MIMAT0019464 Petromyzon marinus miR-135a-3p 12 80
tgu-miR-135a-2-3p MIMAT0031089 Taeniopygia guttata miR-135a-2-3p 12 80
tgu-miR-454-5p MIMAT0027011 Taeniopygia guttata miR-454-5p 12 80
tgu-miR-135a-1-3p MIMAT0014643 Taeniopygia guttata miR-135a-1-3p 12 80
ppc-miR-2272 MIMAT0011729 Pristionchus pacificus miR-2272 12 80
ppc-miR-2267 MIMAT0011704 Pristionchus pacificus miR-2267 12 80
crm-miR-58b-5p MIMAT0011614 Caenorhabditis remanei miR-58b-5p 12 80
crm-miR-58a MIMAT0011545 Caenorhabditis remanei miR-58a 12 80
cfa-miR-135a-3p MIMAT0006628 Canis familiaris miR-135a-3p 12 80
mml-miR-135b-3p MIMAT0026820 Macaca mulatta miR-135b-3p 12 80
gga-miR-1759-5p MIMAT0007666 Gallus gallus miR-1759-5p 12 80
oan-miR-135a-3p MIMAT0007193 Ornithorhynchus anatinus miR-135a-3p 12 80
oan-miR-454-5p MIMAT0007156 Ornithorhynchus anatinus miR-454-5p 12 80
oan-miR-135b-1-3p MIMAT0006871 Ornithorhynchus anatinus miR-135b... 12 80
mdo-miR-135b-3p MIMAT0026667 Monodelphis domestica miR-135b-3p 12 80
mdo-miR-135a-3p MIMAT0026666 Monodelphis domestica miR-135a-3p 12 80
mmu-miR-652-5p MIMAT0017260 Mus musculus miR-652-5p 12 80
hsa-miR-454-5p MIMAT0003884 Homo sapiens miR-454-5p 12 80
hsa-miR-652-5p MIMAT0022709 Homo sapiens miR-652-5p 12 80
mml-miR-135a-2-3p MIMAT0026567 Macaca mulatta miR-135a-2-3p 12 80
gga-miR-135a-3-3p MIMAT0031038 Gallus gallus miR-135a-3-3p 12 80
gga-miR-135a-2-3p MIMAT0026489 Gallus gallus miR-135a-2-3p 12 80
rno-miR-135a-3p MIMAT0004732 Rattus norvegicus miR-135a-3p 12 80
hsa-miR-135b-3p MIMAT0004698 Homo sapiens miR-135b-3p 12 80
cel-miR-357-5p MIMAT0020343 Caenorhabditis elegans miR-357-5p 12 80
mmu-miR-135a-2-3p MIMAT0017064 Mus musculus miR-135a-2-3p 12 80
mmu-miR-135b-3p MIMAT0017044 Mus musculus miR-135b-3p 12 80
rno-miR-135b-3p MIMAT0017043 Rattus norvegicus miR-135b-3p 12 80
cel-miR-58a-5p MIMAT0015100 Caenorhabditis elegans miR-58a-5p 12 80
>mmu-miR-7046-5p MIMAT0027996 Mus musculus miR-7046-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accctac 7
|||||||
Sbjct: 8 accctac 2
>ebv-miR-BART14-5p MIMAT0003425 Epstein Barr miR-BART14-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accctac 7
|||||||
Sbjct: 2 accctac 8
>ssc-miR-9797-3p MIMAT0037015 Sus scrofa miR-9797-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>oha-miR-135-3-3p MIMAT0036707 Ophiophagus hannah miR-135-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>oha-miR-135-2-3p MIMAT0036706 Ophiophagus hannah miR-135-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>mmu-miR-9769-3p MIMAT0036462 Mus musculus miR-9769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>chi-miR-454-5p MIMAT0036239 Capra hircus miR-454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 1 acccta 6
>chi-miR-135b-3p MIMAT0035954 Capra hircus miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>tae-miR9666a-3p MIMAT0035778 Triticum aestivum miR9666a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>efu-miR-135 MIMAT0034970 Eptesicus fuscus miR-135
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>cfa-miR-8855 MIMAT0034350 Canis familiaris miR-8855
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 8 acccta 3
>ssa-miR-454-5p MIMAT0032641 Salmo salar miR-454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 1 acccta 6
>ssa-miR-135c-3p MIMAT0032349 Salmo salar miR-135c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>bdi-miR7780-3p MIMAT0030315 Brachypodium distachyon miR7780-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 6 ccctac 1
>mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 6 ccctac 1
>hsa-miR-6841-5p MIMAT0027584 Homo sapiens miR-6841-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 6 ccctac 1
>hsa-miR-6789-5p MIMAT0027478 Homo sapiens miR-6789-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 6 ccctac 1
>hsa-miR-6755-5p MIMAT0027410 Homo sapiens miR-6755-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>tgu-miR-1759 MIMAT0025405 Taeniopygia guttata miR-1759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>rno-miR-6215 MIMAT0024854 Rattus norvegicus miR-6215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 8 acccta 3
>cgr-miR-652-5p MIMAT0023991 Cricetulus griseus miR-652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 3 acccta 8
>hco-miR-5884 MIMAT0023316 Haemonchus contortus miR-5884
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>cin-miR-5596a-3p MIMAT0022316 Ciona intestinalis miR-5596a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>aca-miR-135-3-3p MIMAT0021753 Anolis carolinensis miR-135-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>aca-miR-135-2-3p MIMAT0021752 Anolis carolinensis miR-135-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>osa-miR5152-5p MIMAT0021101 Oryza sativa miR5152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 6 ccctac 1
>pma-miR-135a-3p MIMAT0019464 Petromyzon marinus miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>tgu-miR-135a-2-3p MIMAT0031089 Taeniopygia guttata
miR-135a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>tgu-miR-454-5p MIMAT0027011 Taeniopygia guttata miR-454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 1 acccta 6
>tgu-miR-135a-1-3p MIMAT0014643 Taeniopygia guttata
miR-135a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>ppc-miR-2272 MIMAT0011729 Pristionchus pacificus miR-2272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>ppc-miR-2267 MIMAT0011704 Pristionchus pacificus miR-2267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>crm-miR-58b-5p MIMAT0011614 Caenorhabditis remanei miR-58b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccctac 7
||||||
Sbjct: 3 ccctac 8
>crm-miR-58a MIMAT0011545 Caenorhabditis remanei miR-58a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccctac 7
||||||
Sbjct: 3 ccctac 8
>cfa-miR-135a-3p MIMAT0006628 Canis familiaris miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>mml-miR-135b-3p MIMAT0026820 Macaca mulatta miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>gga-miR-1759-5p MIMAT0007666 Gallus gallus miR-1759-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acccta 6
||||||
Sbjct: 6 acccta 1
>oan-miR-135a-3p MIMAT0007193 Ornithorhynchus anatinus
miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>oan-miR-454-5p MIMAT0007156 Ornithorhynchus anatinus miR-454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 1 acccta 6
>oan-miR-135b-1-3p MIMAT0006871 Ornithorhynchus anatinus
miR-135b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>mdo-miR-135b-3p MIMAT0026667 Monodelphis domestica miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>mdo-miR-135a-3p MIMAT0026666 Monodelphis domestica miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>mmu-miR-652-5p MIMAT0017260 Mus musculus miR-652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 3 acccta 8
>hsa-miR-454-5p MIMAT0003884 Homo sapiens miR-454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 1 acccta 6
>hsa-miR-652-5p MIMAT0022709 Homo sapiens miR-652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acccta 6
||||||
Sbjct: 3 acccta 8
>mml-miR-135a-2-3p MIMAT0026567 Macaca mulatta miR-135a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>gga-miR-135a-3-3p MIMAT0031038 Gallus gallus miR-135a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>gga-miR-135a-2-3p MIMAT0026489 Gallus gallus miR-135a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>rno-miR-135a-3p MIMAT0004732 Rattus norvegicus miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>hsa-miR-135b-3p MIMAT0004698 Homo sapiens miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>cel-miR-357-5p MIMAT0020343 Caenorhabditis elegans miR-357-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccctac 7
||||||
Sbjct: 1 ccctac 6
>mmu-miR-135a-2-3p MIMAT0017064 Mus musculus miR-135a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 7 ccctac 2
>mmu-miR-135b-3p MIMAT0017044 Mus musculus miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>rno-miR-135b-3p MIMAT0017043 Rattus norvegicus miR-135b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccctac 7
||||||
Sbjct: 8 ccctac 3
>cel-miR-58a-5p MIMAT0015100 Caenorhabditis elegans miR-58a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccctac 7
||||||
Sbjct: 3 ccctac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 66
Number of extensions: 64
Number of successful extensions: 57
Number of sequences better than 100.0: 57
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 57
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
