BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh106-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p 14 20
stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p 14 20
ame-miR-6002-3p MIMAT0023544 Apis mellifera miR-6002-3p 14 20
tca-miR-3897-5p MIMAT0018898 Tribolium castaneum miR-3897-5p 14 20
sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p 14 20
sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b 14 20
sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a 14 20
dme-miR-9369-5p MIMAT0035201 Drosophila melanogaster miR-9369-5p 12 80
eca-miR-9063 MIMAT0034608 Equus caballus miR-9063 12 80
ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus miR-8364p-3p 12 80
ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus miR-8364o-3p 12 80
ppc-miR-8306-3p MIMAT0033137 Pristionchus pacificus miR-8306-3p 12 80
ppc-miR-8364c-2-3p MIMAT0033031 Pristionchus pacificus miR-8364c... 12 80
ppc-miR-8364k-3p MIMAT0033029 Pristionchus pacificus miR-8364k-3p 12 80
ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus miR-8364j-3p 12 80
ppc-miR-8268-5p MIMAT0033022 Pristionchus pacificus miR-8268-5p 12 80
ppc-miR-8364d-3p MIMAT0032911 Pristionchus pacificus miR-8364d-3p 12 80
ppe-miR477-5p MIMAT0031540 Prunus persica miR477-5p 12 80
stu-miR477b-5p MIMAT0031328 Solanum tuberosum miR477b-5p 12 80
prd-miR-7922-3p MIMAT0030687 Panagrellus redivivus miR-7922-3p 12 80
bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p 12 80
lja-miR7539 MIMAT0029365 Lotus japonicus miR7539 12 80
mes-miR477i MIMAT0029289 Manihot esculenta miR477i 12 80
mes-miR477h MIMAT0029288 Manihot esculenta miR477h 12 80
mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p 12 80
ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p 12 80
mdm-miR477a MIMAT0026021 Malus domestica miR477a 12 80
mdm-miR477b MIMAT0026020 Malus domestica miR477b 12 80
mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p 12 80
gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p 12 80
nta-miR477a MIMAT0024721 Nicotiana tabacum miR477a 12 80
bna-miR6028 MIMAT0023648 Brassica napus miR6028 12 80
tca-miR-6014-5p MIMAT0023569 Tribolium castaneum miR-6014-5p 12 80
hsa-miR-5192 MIMAT0021123 Homo sapiens miR-5192 12 80
hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p 12 80
csi-miR473 MIMAT0018474 Citrus sinensis miR473 12 80
cin-miR-4171-5p MIMAT0016779 Ciona intestinalis miR-4171-5p 12 80
aae-miR-2a-5p MIMAT0014225 Aedes aegypti miR-2a-5p 12 80
hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8 12 80
dsi-miR-2582b-5p MIMAT0012523 Drosophila simulans miR-2582b-5p 12 80
ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p 12 80
gga-miR-1717 MIMAT0007614 Gallus gallus miR-1717 12 80
cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p 12 80
ppt-miR1023d-5p MIMAT0005108 Physcomitrella patens miR1023d-5p 12 80
ppt-miR1023c-5p MIMAT0005106 Physcomitrella patens miR1023c-5p 12 80
ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p 12 80
ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p 12 80
ptc-miR473a-5p MIMAT0002062 Populus trichocarpa miR473a-5p 12 80
>oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 7 actctcg 1
>stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 8 actctcg 2
>ame-miR-6002-3p MIMAT0023544 Apis mellifera miR-6002-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 7 actctcg 1
>tca-miR-3897-5p MIMAT0018898 Tribolium castaneum miR-3897-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 actctcg 7
|||||||
Sbjct: 2 actctcg 8
>sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 8 actctcg 2
>sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 8 actctcg 2
>sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actctcg 7
|||||||
Sbjct: 8 actctcg 2
>dme-miR-9369-5p MIMAT0035201 Drosophila melanogaster
miR-9369-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 8 ctctcg 3
>eca-miR-9063 MIMAT0034608 Equus caballus miR-9063
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 8 ctctcg 3
>ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus
miR-8364p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 6 ctctcg 1
>ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus
miR-8364o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 6 ctctcg 1
>ppc-miR-8306-3p MIMAT0033137 Pristionchus pacificus miR-8306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 8 ctctcg 3
>ppc-miR-8364c-2-3p MIMAT0033031 Pristionchus pacificus
miR-8364c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 6 actctc 1
>ppc-miR-8364k-3p MIMAT0033029 Pristionchus pacificus
miR-8364k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 6 actctc 1
>ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus
miR-8364j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 6 actctc 1
>ppc-miR-8268-5p MIMAT0033022 Pristionchus pacificus miR-8268-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctctcg 7
||||||
Sbjct: 3 ctctcg 8
>ppc-miR-8364d-3p MIMAT0032911 Pristionchus pacificus
miR-8364d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 6 actctc 1
>ppe-miR477-5p MIMAT0031540 Prunus persica miR477-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>stu-miR477b-5p MIMAT0031328 Solanum tuberosum miR477b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>prd-miR-7922-3p MIMAT0030687 Panagrellus redivivus miR-7922-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctctcg 7
||||||
Sbjct: 1 ctctcg 6
>bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctctcg 7
||||||
Sbjct: 3 ctctcg 8
>lja-miR7539 MIMAT0029365 Lotus japonicus miR7539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctctcg 7
||||||
Sbjct: 7 ctctcg 2
>mes-miR477i MIMAT0029289 Manihot esculenta miR477i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>mes-miR477h MIMAT0029288 Manihot esculenta miR477h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>mdm-miR477a MIMAT0026021 Malus domestica miR477a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>mdm-miR477b MIMAT0026020 Malus domestica miR477b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>nta-miR477a MIMAT0024721 Nicotiana tabacum miR477a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>bna-miR6028 MIMAT0023648 Brassica napus miR6028
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 8 actctc 3
>tca-miR-6014-5p MIMAT0023569 Tribolium castaneum miR-6014-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>hsa-miR-5192 MIMAT0021123 Homo sapiens miR-5192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 8 actctc 3
>hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>csi-miR473 MIMAT0018474 Citrus sinensis miR473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>cin-miR-4171-5p MIMAT0016779 Ciona intestinalis miR-4171-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>aae-miR-2a-5p MIMAT0014225 Aedes aegypti miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctctcg 7
||||||
Sbjct: 3 ctctcg 8
>dsi-miR-2582b-5p MIMAT0012523 Drosophila simulans miR-2582b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 8 actctc 3
>ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>gga-miR-1717 MIMAT0007614 Gallus gallus miR-1717
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
>cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actctc 6
||||||
Sbjct: 8 actctc 3
>ppt-miR1023d-5p MIMAT0005108 Physcomitrella patens miR1023d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>ppt-miR1023c-5p MIMAT0005106 Physcomitrella patens miR1023c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 3 actctc 8
>ptc-miR473a-5p MIMAT0002062 Populus trichocarpa miR473a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actctc 6
||||||
Sbjct: 1 actctc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 64
Number of successful extensions: 48
Number of sequences better than 100.0: 48
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 48
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
