BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-4*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bmo-miR-3375-3p MIMAT0015566 Bombyx mori miR-3375-3p 16 6.9
mghv-miR-M1-4-3p MIMAT0017188 Mouse gammaherpesvirus miR-M1-4-3p 16 6.9
ata-miR390-3p MIMAT0037141 Aegilops tauschii miR390-3p 14 27
ppc-miR-8349-3p MIMAT0033247 Pristionchus pacificus miR-8349-3p 14 27
bdi-miR390a-3p MIMAT0027043 Brachypodium distachyon miR390a-3p 14 27
aly-miR853-5p MIMAT0017693 Arabidopsis lyrata miR853-5p 14 27
bmo-miR-3246 MIMAT0015428 Bombyx mori miR-3246 14 27
zma-miR390b-3p MIMAT0015367 Zea mays miR390b-3p 14 27
zma-miR390a-3p MIMAT0015333 Zea mays miR390a-3p 14 27
osa-miR390-3p MIMAT0022888 Oryza sativa miR390-3p 14 27
>bmo-miR-3375-3p MIMAT0015566 Bombyx mori miR-3375-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 agatagca 8
||||||||
Sbjct: 8 agatagca 1
>mghv-miR-M1-4-3p MIMAT0017188 Mouse gammaherpesvirus
miR-M1-4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agatagca 8
||||||||
Sbjct: 1 agatagca 8
>ata-miR390-3p MIMAT0037141 Aegilops tauschii miR390-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatagc 7
|||||||
Sbjct: 8 agatagc 2
>ppc-miR-8349-3p MIMAT0033247 Pristionchus pacificus miR-8349-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatagca 8
|||||||
Sbjct: 8 gatagca 2
>bdi-miR390a-3p MIMAT0027043 Brachypodium distachyon miR390a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatagc 7
|||||||
Sbjct: 8 agatagc 2
>aly-miR853-5p MIMAT0017693 Arabidopsis lyrata miR853-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatagca 8
|||||||
Sbjct: 8 gatagca 2
>bmo-miR-3246 MIMAT0015428 Bombyx mori miR-3246
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatagca 8
|||||||
Sbjct: 8 gatagca 2
>zma-miR390b-3p MIMAT0015367 Zea mays miR390b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatagc 7
|||||||
Sbjct: 8 agatagc 2
>zma-miR390a-3p MIMAT0015333 Zea mays miR390a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatagc 7
|||||||
Sbjct: 8 agatagc 2
>osa-miR390-3p MIMAT0022888 Oryza sativa miR390-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatagc 7
|||||||
Sbjct: 8 agatagc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 77
Number of successful extensions: 50
Number of sequences better than 100.0: 10
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)