BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m16*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725 16 6.9
dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983 16 6.9
mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p 16 6.9
ata-miR172c-5p MIMAT0037222 Aegilops tauschii miR172c-5p 14 27
efu-miR-9262 MIMAT0034882 Eptesicus fuscus miR-9262 14 27
hsa-miR-4642 MIMAT0019702 Homo sapiens miR-4642 14 27
aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p 14 27
aly-miR172a-5p MIMAT0017521 Arabidopsis lyrata miR172a-5p 14 27
bmo-miR-3415 MIMAT0015622 Bombyx mori miR-3415 14 27
gga-miR-1663-3p MIMAT0007545 Gallus gallus miR-1663-3p 14 27
mmu-miR-680 MIMAT0003457 Mus musculus miR-680 14 27
ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p 14 27
>cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 agatgcca 8
||||||||
Sbjct: 8 agatgcca 1
>dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agatgcca 8
||||||||
Sbjct: 1 agatgcca 8
>mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agatgcca 8
||||||||
Sbjct: 1 agatgcca 8
>ata-miR172c-5p MIMAT0037222 Aegilops tauschii miR172c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatgcca 8
|||||||
Sbjct: 8 gatgcca 2
>efu-miR-9262 MIMAT0034882 Eptesicus fuscus miR-9262
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatgcca 8
|||||||
Sbjct: 1 gatgcca 7
>hsa-miR-4642 MIMAT0019702 Homo sapiens miR-4642
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatgcca 8
|||||||
Sbjct: 8 gatgcca 2
>aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatgcc 7
|||||||
Sbjct: 8 agatgcc 2
>aly-miR172a-5p MIMAT0017521 Arabidopsis lyrata miR172a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatgcca 8
|||||||
Sbjct: 8 gatgcca 2
>bmo-miR-3415 MIMAT0015622 Bombyx mori miR-3415
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatgcca 8
|||||||
Sbjct: 1 gatgcca 7
>gga-miR-1663-3p MIMAT0007545 Gallus gallus miR-1663-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatgcca 8
|||||||
Sbjct: 7 gatgcca 1
>mmu-miR-680 MIMAT0003457 Mus musculus miR-680
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatgcc 7
|||||||
Sbjct: 8 agatgcc 2
>ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatgcc 7
|||||||
Sbjct: 8 agatgcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 123
Number of extensions: 108
Number of successful extensions: 98
Number of sequences better than 100.0: 12
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
